RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 PNLIPRP2P54317 469 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 CDH15P55291 814 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 RPS18P62269 152 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 RPS15P62841 145 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 COX10Q12887 443 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 SKP2Q13309 424 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 ATP1A1-AS1Q5TC04 95 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 CBLN3Q6UW01 205 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 LYPD8Q6UX82 237 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 CD300LDQ6UXZ3 194 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 KIF18BQ86Y91 864 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 LSMEM1Q8N8F7 131 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 GATSQ8NAP1 163 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 CNIH3Q8TBE1 160 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 PIGXQ8TBF5 258 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 RNF217Q8TC41 542 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 PHOSPHO1Q8TCT1 267 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 THAP3Q8WTV1 239 aaPredicted RBP8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 APH1BQ8WW43 257 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 IMMP1LQ96LU5 166 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 ZNF426Q9BUY5 554 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 YTHDF1Q9BYJ9 559 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 TRIM2Q9C040 744 aa8.68□□□□□ -1.02
PDLIM5-223ENST00000627587 OR6C70A6NIJ9 312 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 TRIM64CA6NLI5 447 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 ZAR1LA6NP61 321 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 GTPBP1O00178 669 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 MASP2O00187 686 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 SOCS6O14544 535 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 WBP4O75554 376 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 AGFG2O95081 481 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 SOX14O95416 240 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 TFAP2AP05549 437 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 NGFRP08138 427 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 RAB40ALP0C0E4 278 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 GABRB1P18505 474 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 ENDOUP21128 410 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 GSTM3P21266 225 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 GGT2P36268 569 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 GSSP48637 474 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 MLLT10P55197 1068 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 NUP107P57740 925 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 COPZ1P61923 177 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 PTGES3Q15185 160 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 EXT1Q16394 746 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 BTBD16Q32M84 506 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 KCTD21Q4G0X4 260 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 TMEM236Q5W0B7 351 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 KIRREL2Q6UWL6 708 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 LINC00114Q6XXX2 140 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 MBOAT2Q6ZWT7 520 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 ENTHD1Q8IYW4 607 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 ELP5Q8TE02 316 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 CT55Q8WUE5 264 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 ZNF700Q9H0M5 742 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 PAK1IP1Q9NWT1 392 aaPredicted RBP8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 CNIH4Q9P003 139 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 RPS6KB2Q9UBS0 482 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 NPFFR2Q9Y5X5 522 aa8.67□□□□□ -1.02
PDLIM5-223ENST00000627587 USP9YO00507 2555 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 A0A1B0GWA3 101 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 A0A1W2PQD3 144 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 DPPA5A6NC42 116 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 H3BN98 237 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 M0R129 80 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 WWP2O00308 870 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CDC42EP2O14613 210 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 ZNF264O43296 627 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CHP2O43745 196 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 FADS1O60427 444 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 PPM1BO75688 479 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 HTR1AP08908 422 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CRHBPP24387 322 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 POU1F1P28069 291 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 TMED10P49755 219 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CRISP1P54107 249 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CDK5R2Q13319 367 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 EFR3AQ14156 821 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 MAD2L1BPQ15013 274 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 C6orf141Q5SZD1 244 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CCDC103Q8IW40 242 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 NRMQ8IXM6 262 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 RNF113BQ8IZP6 322 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 DEPDC4Q8N2C3 294 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CADM2Q8N3J6 435 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 TMCO5AQ8N6Q1 288 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 TSPAN14Q8NG11 270 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 OR11G2Q8NGC1 345 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 CPT1CQ8TCG5 803 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 GNPDA2Q8TDQ7 276 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 GRHL3Q8TE85 626 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 SSC4DQ8WTU2 575 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 RNF138Q8WVD3 245 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 TMEM239Q8WW34 195 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 HDAC2Q92769 488 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 FAM46AQ96IP4 442 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 MRPS26Q9BYN8 205 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 DEFB126Q9BYW3 111 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 TBL1XR1Q9BZK7 514 aa8.66□□□□□ -1.02
PDLIM5-223ENST00000627587 PLA2G12AQ9BZM1 189 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms