RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NEUROG3Q9Y4Z2 214 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 AP4B1Q9Y6B7 739 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 A0A1B0GWB2 263 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ESYT2A0FGR8 921 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 RNF222A6NCQ9 220 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 SLC9B1P1A6NJY1 282 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 H3BMQ9 156 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 DDX39AO00148 427 aaKnown RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 LAD1O00515 517 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 BET1O15155 118 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 SSX5O60225 188 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 FAM189A1O60320 539 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 SLITRK3O94933 977 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 OLFM2O95897 454 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 HLA-DPA1P20036 260 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 UQCRC2P22695 453 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 DPP4P27487 766 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 CD34P28906 385 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 SFNP31947 248 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 SLC26A5P58743 744 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 GABPB1Q06547 395 aaPredicted RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 NRF1Q16656 503 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ADPRMQ3LIE5 342 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 CASC10Q5T4H9 136 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 C1orf146Q5VVC0 180 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ACP7Q6ZNF0 438 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 M1APQ8TC57 530 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 DQX1Q8TE96 717 aaKnown RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 RAB7BQ96AH8 199 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 CELF6Q96J87 481 aaKnown RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 PGLYRP4Q96LB8 373 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 VSTM2LQ96N03 204 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 KCNA7Q96RP8 456 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 RUFY1Q96T51 708 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 HDHD3Q9BSH5 251 aaPredicted RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ACAT2Q9BWD1 397 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 XPO4Q9C0E2 1151 aaKnown RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 LHX9Q9NQ69 397 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ANO10Q9NW15 660 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 RDH8Q9NYR8 311 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 WRAP73Q9P2S5 460 aaPredicted RBP1.18□□□□□ -2.22
SCN1A-208ENST00000625916 MTRRQ9UBK8 725 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ATP6V1HQ9UI12 483 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 ANGPTL2Q9UKU9 493 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 RNF6Q9Y252 685 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 OARD1Q9Y530 152 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 MAD1L1Q9Y6D9 718 aa1.18□□□□□ -2.22
SCN1A-208ENST00000625916 PP2D1A8MPX8 630 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 KIF2AO00139 706 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 DUX1O43812 170 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 JAK2O60674 1132 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 RHOXF2BP0C7M4 288 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 PNMA6AP0CW24 399 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 RRASP10301 218 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 CRISP2P16562 243 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 OTX2P32243 289 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 CYLC1P35663 651 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 MAGEA5P43359 124 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 BDKRB1P46663 353 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ATXN3P54252 364 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 SELENOTP62341 195 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 RIPPLY1Q0D2K3 151 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 LAGE3Q14657 143 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ATXN7L3Q14CW9 347 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ARL6IP1Q15041 203 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 CHI3L2Q15782 390 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 CCDC57Q2TAC2 916 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 LY6G6FQ5SQ64 297 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 LDLRAP1Q5SW96 308 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 FAHD2BQ6P2I3 314 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 FAM199XQ6PEV8 388 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 C6orf89Q6UWU4 347 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 COX15Q7KZN9 410 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 C6orf120Q7Z4R8 191 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 GCNT2Q8N0V5 402 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 RNF148Q8N7C7 305 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 FAM71CQ8NEG0 241 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 OR8H1Q8NGG4 311 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 PAQR8Q8TEZ7 354 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 FAHD2AQ96GK7 314 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 GAL3ST1Q99999 423 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 SPATA16Q9BXB7 569 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ULBP2Q9BZM5 246 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ALDH8A1Q9H2A2 487 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ZNF385DQ9H6B1 395 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ROPN1Q9HAT0 212 aaPredicted RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 YAE1D1Q9NRH1 226 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ZNF586Q9NXT0 402 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 B3GNT2Q9NY97 397 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 FETUBQ9UGM5 382 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 WARS2Q9UGM6 360 aaKnown RBP1.17□□□□□ -2.22
SCN1A-208ENST00000625916 MMACHCQ9Y4U1 282 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 UBIAD1Q9Y5Z9 338 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 RFNGQ9Y644 331 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 SPACA6W5XKT8 324 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 CUX2O14529 1486 aa1.17□□□□□ -2.22
SCN1A-208ENST00000625916 ABCC4O15439 1325 aa1.16□□□□□ -2.22
SCN1A-208ENST00000625916 IGHV3OR16-13A0A075B7E8 117 aa1.16□□□□□ -2.22
SCN1A-208ENST00000625916 TRAV40A0A0B4J280 105 aa1.16□□□□□ -2.22
SCN1A-208ENST00000625916 A0A0G2JRQ6 117 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms