RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 ARL8AQ96BM9 186 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 TESCQ96BS2 214 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 NEURL3Q96EH8 262 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 SLC35A5Q9BS91 424 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 CXorf56Q9H5V9 222 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 CTPS2Q9NRF8 586 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 SERINC1Q9NRX5 453 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 ZNF701Q9NV72 531 aaPredicted RBP12.71□□□□□ -0.37
VMP1-206ENST00000587945 MARCOQ9UEW3 520 aaPredicted RBP12.71□□□□□ -0.37
VMP1-206ENST00000587945 HAO1Q9UJM8 370 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 LAMP3Q9UQV4 416 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 RNF115Q9Y4L5 304 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 DNHD1Q96M86 4753 aa12.71□□□□□ -0.37
VMP1-206ENST00000587945 PRR14LQ5THK1 2151 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 FAM171A2A8MVW0 826 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 E9PBE3 544 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 SULT2B1O00204 365 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 ADAM11O75078 769 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 AGR2O95994 175 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 SOD3P08294 240 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 ALDOCP09972 364 aaKnown RBP12.7□□□□□ -0.38
VMP1-206ENST00000587945 TFPIP10646 304 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 PAX1P15863 534 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 S100A3P33764 101 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 KHKP50053 298 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 BST1Q10588 318 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 STK11Q15831 433 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 GPAT3Q53EU6 434 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 SYT14P1Q58G82 188 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 TNFAIP8L3Q5GJ75 292 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 SEZ6L2Q6UXD5 910 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 Q6ZT83 130 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 RNF130Q86XS8 419 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 ANKRD42Q8N9B4 389 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 FAM71CQ8NEG0 241 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 VPS37AQ8NEZ2 397 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 ZNF563Q8TA94 476 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 TMEM234Q8WY98 164 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 ARL5BQ96KC2 179 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 INPP5KQ9BT40 448 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 CCDC106Q9BWC9 280 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 OR11A1Q9GZK7 315 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 SAP130Q9H0E3 1048 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 MEAF6Q9HAF1 191 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 SLC35A3Q9Y2D2 325 aa12.7□□□□□ -0.38
VMP1-206ENST00000587945 FN1P02751 2386 aaKnown RBP12.7□□□□□ -0.38
VMP1-206ENST00000587945 USF3Q68DE3 2245 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 DPRXA6NFQ7 191 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 ZNF724A8MTY0 619 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 HMGN4O00479 90 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 SDHDO14521 159 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 IGHV3-9P01782 118 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 CD3EP07766 207 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 CCNA2P20248 432 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 IGHV1-2P23083 117 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 PCSK6P29122 969 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 IL12AP29459 219 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 CDKN2CP42773 168 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 CLNS1AP54105 237 aaKnown RBP12.69□□□□□ -0.38
VMP1-206ENST00000587945 BSPH1Q075Z2 132 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 SYPL1Q16563 259 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 GALNT5Q7Z7M9 940 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 ZNF100Q8IYN0 542 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 ANKFN1Q8N957 763 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 KBTBD8Q8NFY9 601 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 PIWIL2Q8TC59 973 aaKnown RBP12.69□□□□□ -0.38
VMP1-206ENST00000587945 CNOT9Q92600 299 aaKnown RBP12.69□□□□□ -0.38
VMP1-206ENST00000587945 CCDC115Q96NT0 180 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 POTEKPQ9BYX7 375 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 ESRP2Q9H6T0 727 aaKnown RBP12.69□□□□□ -0.38
VMP1-206ENST00000587945 WDR55Q9H6Y2 383 aaPredicted RBP12.69□□□□□ -0.38
VMP1-206ENST00000587945 NGBQ9NPG2 151 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 POLE3Q9NRF9 147 aa12.69□□□□□ -0.38
VMP1-206ENST00000587945 NUP214P35658 2090 aaPredicted RBP12.69□□□□□ -0.38
VMP1-206ENST00000587945 GOLGA8QA0A0J9YX86 632 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 GOLGA8OA6NCC3 632 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 CCDC154A6NI56 674 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 GOLGA8NF8WBI6 632 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 AP3D1O14617 1153 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 SNUPNO95149 360 aaKnown RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 GSNP06396 782 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 CHRM4P08173 479 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 GUSBP08236 651 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 NTF4P34130 210 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 APOBEC1P41238 236 aaKnown RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 IDH2P48735 452 aaKnown RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 RPS4XP62701 263 aaKnown RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 CSNK2A1P68400 391 aaPredicted RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 KCNJ10P78508 379 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 TNK1Q13470 666 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 DPY19L1Q2PZI1 675 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 ABLIM2Q6H8Q1 611 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 ADAM5Q6NVV9 412 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 MTDHQ86UE4 582 aaKnown RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 ADGRG3Q86Y34 549 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 ARFGAP2Q8N6H7 521 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 PNPT1Q8TCS8 783 aaKnown RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 MGARPQ8TDB4 240 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 SMAP2Q8WU79 429 aaPredicted RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 SLC25A43Q8WUT9 341 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms