RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 FANK1Q8TC84 345 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 TTC9Q92623 222 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 OSTF1Q92882 214 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ZNF524Q96C55 264 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 TMCO6Q96DC7 493 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 BPIFA2Q96DR5 249 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 SAMD8Q96LT4 415 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 IL4I1Q96RQ9 567 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 RASL10BQ96S79 203 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 RHNO1Q9BSD3 238 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ERVK-18Q9QC07 812 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ICAM5Q9UMF0 924 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 FAM186AA6NE01 2351 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 LOC101059948A0A1B0GTJ6 334 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 ENO4A6NNW6 628 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 TERTO14746 1132 aaKnown RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 MAN1A2O60476 641 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 NUDT14O95848 222 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 MT-ND2P03891 347 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SAGP10523 405 aaPredicted RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 GP1BBP13224 206 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 PGCP20142 388 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 MST1P26927 711 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 ITPKBP27987 946 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SOX3P41225 446 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 PCYT1AP49585 367 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 TMED10P49755 219 aaKnown RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 ST13P50502 369 aaKnown RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 P2RX1P51575 399 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 LIMK1P53667 647 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 GAS1P54826 345 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 MLLT10P55197 1068 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SNRPGP62308 76 aaKnown RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 SLC35A2P78381 396 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 CBFBQ13951 182 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SSPNQ14714 243 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 TOMM34Q15785 309 aaPredicted RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 NEDD8Q15843 81 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SNAPC1Q16533 368 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 NTRK2Q16620 822 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 PGGHGQ32M88 737 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 BICRALQ6AI39 1079 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 FCRLBQ6BAA4 426 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SLC27A4Q6P1M0 643 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 AHSA2Q719I0 299 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 MRGPREQ86SM8 312 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 MISPQ8IVT2 679 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SPARTQ8N0X7 666 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SLC15A4Q8N697 577 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 ZNF540Q8NDQ6 660 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 OR10G3Q8NGC4 313 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 OR5W2Q8NH69 310 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 GPR119Q8TDV5 335 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 DUSP19Q8WTR2 217 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 RNF138Q8WVD3 245 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 IPCEF1Q8WWN9 437 aaPredicted RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 TMIGD2Q96BF3 282 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SPACA9Q96E40 222 aaPredicted RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 SGTBQ96EQ0 304 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 CCNL2Q96S94 520 aaPredicted RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 POLDIP3Q9BY77 421 aaKnown RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 CCDC90BQ9GZT6 254 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 OR52D1Q9H346 318 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 DUSP21Q9H596 190 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 CDCP1Q9H5V8 836 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 AMBNQ9NP70 447 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 PLCXD1Q9NUJ7 323 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 CLN6Q9NWW5 311 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 IL20Q9NYY1 176 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 DNAJC27Q9NZQ0 273 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 KLRF1Q9NZS2 232 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 IL20RAQ9UHF4 553 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 FBXL4Q9UKA2 621 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 SNX5Q9Y5X3 404 aa9.59□□□□□ -0.87
SS18-217ENST00000580958 MRPS18BQ9Y676 258 aaKnown RBP9.59□□□□□ -0.87
SS18-217ENST00000580958 ZFHX2Q9C0A1 2572 aaPredicted RBP9.58□□□□□ -0.88
SS18-217ENST00000580958 IGKV1D-42A0A075B6H8 117 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 TRAV27A0A087WT01 109 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 C21orf140B9A014 251 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 RGS10O43665 173 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 PRKYO43930 277 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 CDC40O60508 579 aaKnown RBP eCLIP9.58□□□□□ -0.88
SS18-217ENST00000580958 ENTPD6O75354 484 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 PTP4A3O75365 173 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 ITGA10O75578 1167 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 CH25HO95992 272 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 HPP00738 406 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 PNMTP11086 282 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 CCNA2P20248 432 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 CSRP1P21291 193 aaKnown RBP9.58□□□□□ -0.88
SS18-217ENST00000580958 TACR3P29371 465 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 PTGDSP41222 190 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 SLC1A3P43003 542 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 FXYD6P3P58550 94 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 CSNK2BP67870 215 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 GABREP78334 506 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 IL10RAQ13651 578 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 QPRTQ15274 297 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 COL28A1Q2UY09 1125 aa9.58□□□□□ -0.88
SS18-217ENST00000580958 TMEM201Q5SNT2 666 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms