RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 CCDC106Q9BWC9 280 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 SRXN1Q9BYN0 137 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 CLEC4MQ9H2X3 399 aaPredicted RBP13.26□□□□□ -0.29
SS18-212ENST00000579061 FANCFQ9NPI8 374 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 SLC52A3Q9NQ40 469 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 CCDC167Q9P0B6 97 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 TESMINQ9Y4I5 508 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 HRNRQ86YZ3 2850 aaPredicted RBP13.25□□□□□ -0.29
SS18-212ENST00000579061 UQCRHLA0A096LP55 91 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 A0A0G2JPF8 293 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 A0A1W2PNR3 127 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 CLDN24A6NM45 220 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 HNRNPCL2B2RXH8 293 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 HNRNPCL3B7ZW38 293 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 C16orf97H3BN30 126 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 HNRNPCL1O60812 293 aaKnown RBP13.25□□□□□ -0.29
SS18-212ENST00000579061 BCAS1O75363 584 aaPredicted RBP13.25□□□□□ -0.29
SS18-212ENST00000579061 PRKD3O94806 890 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 HNRNPCL4P0DMR1 293 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 PPIBP23284 216 aaKnown RBP13.25□□□□□ -0.29
SS18-212ENST00000579061 AGTR1P30556 359 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 MAP2K6P52564 334 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 LIN52Q52LA3 116 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 AGKQ53H12 422 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 SYT14P1Q58G82 188 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 MRPL2Q5T653 305 aaKnown RBP13.25□□□□□ -0.29
SS18-212ENST00000579061 TMPPEQ6ZT21 453 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 HMGN2P46Q86SG4 172 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 STK32CQ86UX6 486 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 ATP6V1C2Q8NEY4 427 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 SLC38A5Q8WUX1 472 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 ROBO4Q8WZ75 1007 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 CHRNA9Q9UGM1 479 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 CLEC4AQ9UMR7 237 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 EDARQ9UNE0 448 aa13.25□□□□□ -0.29
SS18-212ENST00000579061 NR5A2O00482 541 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 CASKO14936 926 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 ADAM11O75078 769 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 BCHEP06276 602 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 THBS1P07996 1170 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 UQCRBP14927 111 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 RYKP34925 604 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 UGT2B10P36537 528 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 KCNJ5P48544 419 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 CSNK2A1P68400 391 aaPredicted RBP13.24□□□□□ -0.29
SS18-212ENST00000579061 LARS2Q15031 903 aaKnown RBP13.24□□□□□ -0.29
SS18-212ENST00000579061 TMEM201Q5SNT2 666 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 BEND4Q6ZU67 534 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 CDC20BQ86Y33 519 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 OR52P1PQ8NH57 321 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 ABHD3Q8WU67 409 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 NINJ1Q92982 152 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 OR5B2Q96R09 309 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 BCO1Q9HAY6 547 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 CACYBPQ9HB71 228 aaKnown RBP13.24□□□□□ -0.29
SS18-212ENST00000579061 BCL2L10Q9HD36 194 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 A4GALTQ9NPC4 353 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 CTPS2Q9NRF8 586 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 SLC25A37Q9NYZ2 338 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 KLHL9Q9P2J3 617 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 KLHL13Q9P2N7 655 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 TRIM33Q9UPN9 1127 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 HDGFL3Q9Y3E1 203 aa13.24□□□□□ -0.29
SS18-212ENST00000579061 TRBV5-3A0A0A0MS03 114 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 A0A1W2PP18 115 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 CDHR4A6H8M9 788 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 CFAP73A6NFT4 308 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 DNPH1O43598 174 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 CYTIPO60759 359 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 PMS2P2O95744 297 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 PPP3CBP16298 524 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 ENPP1P22413 925 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 DNAJA1P31689 397 aaKnown RBP13.23□□□□□ -0.29
SS18-212ENST00000579061 CCKARP32238 428 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 SLC1A3P43003 542 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 IDH2P48735 452 aaKnown RBP13.23□□□□□ -0.29
SS18-212ENST00000579061 DIO1P49895 249 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 EPS8Q12929 822 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 PAGE3Q5JUK9 113 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 RNF220Q5VTB9 566 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 METTL21CQ5VZV1 264 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 ADGRG3Q86Y34 549 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 MSRB3Q8IXL7 192 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 TSPEARQ8WU66 669 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 TMEM19Q96HH6 336 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 WFIKKN1Q96NZ8 548 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 OR10A4Q9H209 315 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 ZNF385DQ9H6B1 395 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 ARMC7Q9H6L4 198 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 ZNF226Q9NYT6 803 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 ZNF232Q9UNY5 417 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 CORO2BQ9UQ03 480 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 IFT52Q9Y366 437 aa13.23□□□□□ -0.29
SS18-212ENST00000579061 SULT2B1O00204 365 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 AP3D1O14617 1153 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ZNF208O43345 1280 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 HRGP04196 525 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 YES1P07947 543 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ETS2P15036 469 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 NCF2P19878 526 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms