RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 FUZQ9BT04 418 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 DCAF13Q9NV06 445 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 OR14I1A6ND48 311 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 GPR39O43194 453 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 COCHO43405 550 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 CSO75390 466 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 CRYABP02511 175 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 ITGB7P26010 798 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 CSNK1DP48730 415 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 CSNK1EP49674 416 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 STK19P49842 368 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 STC1P52823 247 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SP3Q02447 781 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 PLAG1Q6DJT9 500 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 MZT2AQ6P582 158 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 C11orf88Q6PI97 169 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 TMEM108Q6UXF1 575 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 TMPRSS11FQ6ZWK6 438 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 HS6ST3Q8IZP7 471 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 ZNF548Q8NEK5 533 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 SELENOMQ8WWX9 145 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 GAL3ST2Q9H3Q3 398 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 TLR8Q9NR97 1041 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 RASL12Q9NYN1 266 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 GNG8Q9UK08 70 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 ZNF223Q9UK11 482 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 MRPS18CQ9Y3D5 142 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 SPIN1Q9Y657 262 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 ZFP37Q9Y6Q3 630 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 ZNF840PA6NDX5 716 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SULT2B1O00204 365 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 C1GALT1C1LP0DN25 315 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 ELK1P19419 428 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 AHCYP23526 432 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 CDX1P47902 265 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 E2F1Q01094 437 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 DDX39BQ13838 428 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 KCNMB1Q16558 191 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 PAQR6Q6TCH4 344 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 IL20RBQ6UXL0 311 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 OR10A7Q8NGE5 316 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 CD99L2Q8TCZ2 262 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 HMGB4Q8WW32 186 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 TCTN2Q96GX1 697 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 ZFP3Q96NJ6 502 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SEPT5Q99719 369 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 MRPL15Q9P015 296 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 A0A1W2PPH5 198 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 A0A1W2PPQ1 181 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SIAH2O43255 324 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 PCGF2P35227 344 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 YBEYP58557 167 aaPredicted RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 RAP2BP61225 183 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 ARF5P84085 180 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 TDGQ13569 410 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 PTPRNQ16849 979 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 WDR88Q6ZMY6 472 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SMIM15Q7Z3B0 74 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SIAH3Q8IW03 269 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 JAGN1Q8N5M9 183 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 OR1N1Q8NGS0 311 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 EXTL1Q92935 676 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 CDKN2AIPNLQ96HQ2 116 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 OR4K3Q96R72 315 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 IL4I1Q96RQ9 567 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 CDCA4Q9BXL8 241 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 CFHR5Q9BXR6 569 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 LAT2Q9GZY6 243 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 IKZF5Q9H5V7 419 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 ZNF226Q9NYT6 803 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 GSTK1Q9Y2Q3 226 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 NPTNQ9Y639 398 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 DOCK6Q96HP0 2047 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 NPEPPSL1A6NEC2 478 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 IFITM10A6NMD0 228 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 GABRR3A8MPY1 467 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 A8MWP6 167 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SMAD9O15198 467 aaKnown RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 TGOLN2O43493 480 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SLC25A12O75746 678 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 TFPIP10646 304 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SELPP16109 830 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SLC11A2P49281 568 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 LUMP51884 338 aaPredicted RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 RPL38P63173 70 aaKnown RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 TMEM201Q5SNT2 666 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 SLITRK4Q8IW52 837 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 C1orf52Q8N6N3 182 aaKnown RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 SENP5Q96HI0 755 aaPredicted RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 TMEM185BQ9H7F4 350 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 BARX1Q9HBU1 254 aaPredicted RBP10.07□□□□□ -0.8
CLK3-226ENST00000569406 GKN1Q9NS71 199 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 PIPOXQ9P0Z9 390 aa10.07□□□□□ -0.8
CLK3-226ENST00000569406 OR7A17O14581 309 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 MOSPD3O75425 235 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 STC2O76061 302 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 MBPP02686 304 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 HOXB5P09067 269 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 RAB5AP20339 215 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 HOXA5P20719 270 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms