RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TUBGCP3Q96CW5 907 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 NMUR2Q9GZQ4 415 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 SERINC1Q9NRX5 453 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 ALPK2Q86TB3 2170 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 A0A1W2PR80 420 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 OR5H1A6NKK0 313 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 RNF212BA8MTL3 300 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 SULT2B1O00204 365 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 BCAS1O75363 584 aaPredicted RBP14.87□□□□□ -0.03
CLN3-211ENST00000564091 STX11O75558 287 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 RAD51DO75771 328 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 TFPIP10646 304 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 NTF4P34130 210 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 IRX1P78414 480 aaPredicted RBP14.87□□□□□ -0.03
CLN3-211ENST00000564091 CHRNEQ04844 493 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 MAPK14Q16539 360 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 SYT14P1Q58G82 188 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 OR4F3Q6IEY1 312 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 BHLHB9Q6PI77 547 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 HIPK1Q86Z02 1210 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 UBE2J2Q8N2K1 259 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 EIF1ADQ8N9N8 165 aaKnown RBP14.87□□□□□ -0.03
CLN3-211ENST00000564091 OR52N5Q8NH56 324 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 TCP10LQ8TDR4 215 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 HTRA1Q92743 480 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 RHNO1Q9BSD3 238 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 GRIP2Q9C0E4 1043 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 BARX1Q9HBU1 254 aaPredicted RBP14.87□□□□□ -0.03
CLN3-211ENST00000564091 ACER3Q9NUN7 267 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 FAIMQ9NVQ4 179 aa14.87□□□□□ -0.03
CLN3-211ENST00000564091 FREM1Q5H8C1 2179 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 RNF103-CHMP3A0A140T963 221 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 DUXAA6NLW8 204 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 E7EQL1 145 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 PGCP20142 388 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 ZNF83P51522 516 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 CLDN8P56748 225 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 CSNK2A1P68400 391 aaPredicted RBP14.86□□□□□ -0.03
CLN3-211ENST00000564091 SPOCK1Q08629 439 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 ARHGAP11BQ3KRB8 267 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 AGAP6Q5VW22 663 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 FBXW9Q5XUX1 488 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 ABLIM2Q6H8Q1 611 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 EIF3MQ7L2H7 374 aaKnown RBP14.86□□□□□ -0.03
CLN3-211ENST00000564091 HMGN2P46Q86SG4 172 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 MTDHQ86UE4 582 aaKnown RBP14.86□□□□□ -0.03
CLN3-211ENST00000564091 P2RY8Q86VZ1 359 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 TMEM234Q8WY98 164 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 ARL5BQ96KC2 179 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 SLC35G5Q96KT7 338 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 CACNG6Q9BXT2 260 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 ZNF350Q9GZX5 532 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 OR51I1Q9H343 314 aa14.86□□□□□ -0.03
CLN3-211ENST00000564091 NOSIPQ9Y314 301 aaKnown RBP14.86□□□□□ -0.03
CLN3-211ENST00000564091 IGKV3D-15A0A087WSY6 115 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 CIB4A0PJX0 185 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 FAM234BA2RU67 622 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 CCT8L1PA6NM43 557 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 ZNF716A6NP11 495 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 A8MV72 311 aaPredicted RBP14.85□□□□□ -0.03
CLN3-211ENST00000564091 AK1P00568 194 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 OR12D1P0DN82 309 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 TTKP33981 857 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 RYKP34925 604 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 PGM1P36871 562 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 NUDT6P53370 316 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 FOXG1P55316 489 aaPredicted RBP14.85□□□□□ -0.03
CLN3-211ENST00000564091 PODNL1Q6PEZ8 512 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 SLC22A25Q6T423 547 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 TMEM108Q6UXF1 575 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 C16orf62Q7Z3J2 963 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 ZNF563Q8TA94 476 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 XAGE5Q8WWM1 108 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 APH1AQ96BI3 265 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 ZG16BQ96DA0 208 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 RADILQ96JH8 1075 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 ADAD1Q96M93 576 aaKnown RBP14.85□□□□□ -0.03
CLN3-211ENST00000564091 CCDC106Q9BWC9 280 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 C1QTNF6Q9BXI9 259 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 CTPS2Q9NRF8 586 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 EMC3Q9P0I2 261 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 POU2F3Q9UKI9 436 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 SLC25A15Q9Y619 301 aa14.85□□□□□ -0.03
CLN3-211ENST00000564091 A0A096LNT2 108 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 GOLGA8QA0A0J9YX86 632 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 GOLGA8OA6NCC3 632 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 GOLGA8NF8WBI6 632 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 IFNA2P01563 188 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 CREB1P16220 341 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 CD40P25942 277 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 SERPINB5P36952 375 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 EMX2Q04743 252 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 PDK3Q15120 406 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 NRF1Q16656 503 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 TYW3Q6IPR3 259 aaKnown RBP14.84□□□□□ -0.03
CLN3-211ENST00000564091 C11orf71Q6IPW1 123 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 TNFAIP8L2Q6P589 184 aaPredicted RBP14.84□□□□□ -0.03
CLN3-211ENST00000564091 B3GLCTQ6Y288 498 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 SSX8Q7RTT4 187 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 ANKRD46Q86W74 232 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms