RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ATAD3AQ9NVI7 634 aa14.46□□□□□ -0.09
CLN3-208ENST00000561505 NUP214P35658 2090 aaPredicted RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 FAM234BA2RU67 622 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 DUXAA6NLW8 204 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 TMEM233B4DJY2 109 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 C9JVG2 144 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 COPEO14579 308 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 PHF1O43189 567 aaPredicted RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 FCMRO60667 390 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 UGT2B17O75795 530 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 C6orf47O95873 294 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 CHRNGP07510 517 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 KRT4P19013 534 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 PRPS1L1P21108 318 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 CD40P25942 277 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 FKBP2P26885 142 aaKnown RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 CLK1P49759 484 aaKnown RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 CSNK2A1P68400 391 aaPredicted RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 HBA1P69905 142 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 TP53BP2Q13625 1128 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 PTGR1Q14914 329 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 STK11Q15831 433 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 GABRA6Q16445 453 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 ARHGAP11BQ3KRB8 267 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 SYT14P1Q58G82 188 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 PDZK1Q5T2W1 519 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 ZNF544Q6NX49 715 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 C10orf105Q8TEF2 133 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 PROX1Q92786 737 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 ZNF775Q96BV0 537 aaPredicted RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 C3orf30Q96M34 536 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 CCDC106Q9BWC9 280 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 ZNF350Q9GZX5 532 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 SAP130Q9H0E3 1048 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 QRSL1Q9H0R6 528 aaKnown RBP14.45□□□□□ -0.1
CLN3-208ENST00000561505 SERINC1Q9NRX5 453 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 EMC3Q9P0I2 261 aa14.45□□□□□ -0.1
CLN3-208ENST00000561505 ANK2Q01484 3957 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 CENPVL1A0A0U1RR11 272 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 GPR171O14626 319 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 PMS2P2O95744 297 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 DHRS4L1P0CG22 281 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 PGCP20142 388 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 PGM1P36871 562 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 APOBEC1P41238 236 aaKnown RBP14.44□□□□□ -0.1
CLN3-208ENST00000561505 RNF144AP50876 292 aaPredicted RBP14.44□□□□□ -0.1
CLN3-208ENST00000561505 NUDT6P53370 316 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 OR7E24Q6IFN5 339 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 BHLHB9Q6PI77 547 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 CLEC2AQ6UVW9 174 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 B3GLCTQ6Y288 498 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 ZNF100Q8IYN0 542 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 MUC15Q8N387 334 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 TMEM234Q8WY98 164 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 CHMP6Q96FZ7 201 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 TAS2R16Q9NYV7 291 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 GIMAP2Q9UG22 337 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 FIS1Q9Y3D6 152 aa14.44□□□□□ -0.1
CLN3-208ENST00000561505 VWC2LB2RUY7 222 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 SULT2B1O00204 365 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 PEX11AO75192 247 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 STX11O75558 287 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 PTNP21246 168 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 ALDH3A1P30838 453 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 ARRB2P32121 409 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 PLAURQ03405 335 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 MAPK14Q16539 360 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 KLHL17Q6TDP4 642 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 C6orf120Q7Z4R8 191 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 KRTCAP2Q8N6L1 136 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 WDR31Q8NA23 367 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 CCDC63Q8NA47 563 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 OR5D16Q8NGK9 328 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 PRPF18Q99633 342 aaKnown RBP14.43□□□□□ -0.1
CLN3-208ENST00000561505 ASIC5Q9NY37 505 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 LPAR3Q9UBY5 353 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 TRAPPC4Q9Y296 219 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 HDGFL3Q9Y3E1 203 aa14.43□□□□□ -0.1
CLN3-208ENST00000561505 SCN2BO60939 215 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 CSTAP01040 98 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 ITGA5P08648 1049 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 IGHV4-31P0DP07 118 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 SERPINB5P36952 375 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 EFNA4P52798 201 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 FOXG1P55316 489 aaPredicted RBP14.42□□□□□ -0.1
CLN3-208ENST00000561505 SPOCK1Q08629 439 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 RAB35Q15286 201 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 SMU1Q2TAY7 513 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 KRTAP24-1Q3LI83 254 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 IL23RQ5VWK5 629 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 EIF3MQ7L2H7 374 aaKnown RBP14.42□□□□□ -0.1
CLN3-208ENST00000561505 ADGRG3Q86Y34 549 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 DDIASQ8IXT1 998 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 FBXL14Q8N1E6 418 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 ZNF525Q8N782 197 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 C1orf162Q8NEQ5 155 aaPredicted RBP14.42□□□□□ -0.1
CLN3-208ENST00000561505 RFWD2Q8NHY2 731 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 APH1AQ96BI3 265 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 ARL5BQ96KC2 179 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 INPP5KQ9BT40 448 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms