RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KIAA1549Q9HCM3 1950 aa19.62■□□□□ 0.73
SNX1-210ENST00000560260 UBR5O95071 2799 aaPredicted RBP19.62■□□□□ 0.73
SNX1-210ENST00000560260 TRGV8A0A0C4DH27 118 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 A0A1B0GWA3 101 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 LINC01387J3KSC0 135 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 PRRG2O14669 202 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 SEMA7AO75326 666 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 DNAJC8O75937 253 aaPredicted RBP19.61■□□□□ 0.73
SNX1-210ENST00000560260 ATP5HO75947 161 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 UQCRBP14927 111 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 OR1E2P47887 323 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 SRYQ05066 204 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 SELENBP1Q13228 472 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 BCL2A1Q16548 175 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 RTL6Q6ICC9 239 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 WBP2NLQ6ICG8 309 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 NCCRP1Q6ZVX7 275 aaPredicted RBP19.61■□□□□ 0.73
SNX1-210ENST00000560260 ADGRG3Q86Y34 549 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 PRR7Q8TB68 274 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 PHF10Q8WUB8 498 aaKnown RBP19.61■□□□□ 0.73
SNX1-210ENST00000560260 PROX1Q92786 737 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 MCHR1Q99705 422 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 LRMDAQ9H2I8 198 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 DCAF13Q9NV06 445 aaKnown RBP19.61■□□□□ 0.73
SNX1-210ENST00000560260 ADPRHL2Q9NX46 363 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 FAM215AQ9Y5M1 114 aa19.61■□□□□ 0.73
SNX1-210ENST00000560260 TMED7-TICAM2A0A0A6YYA0 188 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 A0A0J9YW62 118 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 J3QKU1 62 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 GSC2O15499 205 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 SFTPDP35247 375 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 POLR2HP52434 150 aaKnown RBP19.6■□□□□ 0.73
SNX1-210ENST00000560260 RAC1P63000 192 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 OR1Q1Q15612 314 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 ZNF585AQ6P3V2 769 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 PLXDC2Q6UX71 529 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 ATG4DQ86TL0 474 aaPredicted RBP19.6■□□□□ 0.73
SNX1-210ENST00000560260 LILRA2Q8N149 483 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 LSMEM1Q8N8F7 131 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 ATP6V1C2Q8NEY4 427 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 OR52E4Q8NGH9 312 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 NSMCE2Q96MF7 247 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 TUBA1CQ9BQE3 449 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 ZNF559Q9BR84 538 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 COQ10BQ9H8M1 238 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 EVA1AQ9H8M9 152 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 TMED7Q9Y3B3 224 aa19.6■□□□□ 0.73
SNX1-210ENST00000560260 TMEM72A0PK05 275 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 H0Y3Z8 333 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 EBAG9O00559 213 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 LYPD3O95274 346 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 THY1P04216 161 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 CCNA2P20248 432 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 APOBEC1P41238 236 aaKnown RBP19.59■□□□□ 0.73
SNX1-210ENST00000560260 COPZ1P61923 177 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.59■□□□□ 0.73
SNX1-210ENST00000560260 ACSF3Q4G176 576 aaPredicted RBP19.59■□□□□ 0.73
SNX1-210ENST00000560260 C3orf33Q6P1S2 294 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 CYP2R1Q6VVX0 501 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 CCDC121Q6ZUS5 278 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 RANBP3LQ86VV4 465 aaPredicted RBP19.59■□□□□ 0.73
SNX1-210ENST00000560260 MARVELD2Q8N4S9 558 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 KLHL15Q96M94 604 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 TRIM2Q9C040 744 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 ACTR3BQ9P1U1 418 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 CHRNA9Q9UGM1 479 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 SLC9A8Q9Y2E8 581 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 V9GYQ6 96 aa19.59■□□□□ 0.73
SNX1-210ENST00000560260 HIVEP3Q5T1R4 2406 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 A0A0B4J2E0 115 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 A0A1B0GX12 115 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 CPSF4LA6NMK7 179 aaKnown RBP19.58■□□□□ 0.73
SNX1-210ENST00000560260 ACOT8O14734 319 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 FMO6PO60774 539 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 TRIM25Q14258 630 aaKnown RBP19.58■□□□□ 0.73
SNX1-210ENST00000560260 IFI44LQ53G44 452 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 ENTPD8Q5MY95 495 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 LCN8Q6JVE9 175 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 TSEN54Q7Z6J9 526 aaKnown RBP19.58■□□□□ 0.73
SNX1-210ENST00000560260 PM20D2Q8IYS1 436 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 ASB9Q96DX5 294 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 OR11A1Q9GZK7 315 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 TP63Q9H3D4 680 aaPredicted RBP19.58■□□□□ 0.73
SNX1-210ENST00000560260 ALKBH4Q9NXW9 302 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 RPS6KA6Q9UK32 745 aa19.58■□□□□ 0.73
SNX1-210ENST00000560260 TCRBV5S2A0A599 114 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 ZC3H12DA2A288 527 aaKnown RBP19.57■□□□□ 0.72
SNX1-210ENST00000560260 FIGNL2A6NMB9 653 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 EIF1AYO14602 144 aaKnown RBP19.57■□□□□ 0.72
SNX1-210ENST00000560260 TNFSF11O14788 317 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 WDR1O75083 606 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 GMNNO75496 209 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 PRKD3O94806 890 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 SEMG1P04279 462 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 FUT4P22083 530 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 ACVR2AP27037 513 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 HTR3AP46098 478 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 TMEM176BQ3YBM2 270 aaPredicted RBP19.57■□□□□ 0.72
SNX1-210ENST00000560260 C1orf185Q5T7R7 199 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 DEF8Q6ZN54 512 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms