RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MRGPRX4Q96LA9 322 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 TM9SF2Q99805 663 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 CADM1Q9BY67 442 aaKnown RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 ACER3Q9NUN7 267 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 STOML1Q9UBI4 398 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 ZNF443Q9Y2A4 671 aaPredicted RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 ZNF175Q9Y473 711 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 CELSR1Q9NYQ6 3014 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ITPR3Q14573 2671 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 A0A0J9YW62 118 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 LOC100653049A0A140TA62 436 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 NKX2-6A6NCS4 301 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SLC22A20A6NK97 555 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 C19orf84I3L1E1 186 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 FAAHO00519 579 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 EIF1AYO14602 144 aaKnown RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 AP3D1O14617 1153 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 KRT34O76011 436 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 IL2RAP01589 272 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 OPN1LWP04000 364 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ETS2P15036 469 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 RYKP34925 604 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ZNF136P52737 540 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SESN3P58005 492 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 RPS3AP61247 264 aaKnown RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 TFF3Q07654 80 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 MERTKQ12866 999 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 EPS8Q12929 822 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SCARB2Q14108 478 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 LARS2Q15031 903 aaKnown RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 CYP51A1Q16850 503 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ZSWIM7Q19AV6 140 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SLC25A35Q3KQZ1 300 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 MMEL1Q495T6 779 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SPATS1Q496A3 300 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 POMZP3Q6PJE2 187 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 HACD2Q6Y1H2 254 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 RINLQ6ZS11 566 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ESPNLQ6ZVH7 1005 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 PLEKHM3Q6ZWE6 761 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 CHMP1BQ7LBR1 199 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 NET1Q7Z628 596 aaPredicted RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 ZNF440Q8IYI8 595 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 LILRA2Q8N149 483 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 POU5F2Q8N7G0 328 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 RELL2Q8NC24 303 aaPredicted RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 OR8J3Q8NGG0 315 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 OR10D3Q8NH80 312 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 FNDC9Q8TBE3 224 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 TMEM234Q8WY98 164 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 FIG4Q92562 907 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 STMN2Q93045 179 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 LRRC58Q96CX6 371 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 RCN3Q96D15 328 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ZNF845Q96IR2 970 aaPredicted RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 KLHL15Q96M94 604 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 ZFP3Q96NJ6 502 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SLC39A3Q9BRY0 314 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 SPATA9Q9BWV2 254 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 PINK1Q9BXM7 581 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 UCK2Q9BZX2 261 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 KAT8Q9H7Z6 458 aaKnown RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 CACYBPQ9HB71 228 aaKnown RBP8.41□□□□□ -1.06
LDLR-211ENST00000560173 RLIMQ9NVW2 624 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 IFT52Q9Y366 437 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 CHST2Q9Y4C5 530 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 MED12LQ86YW9 2145 aa8.41□□□□□ -1.06
LDLR-211ENST00000560173 GJE1A6NN92 205 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 DVL2O14641 736 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 TNFSF11O14788 317 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 CXCL13O43927 109 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 RCBTB2O95199 551 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 ATP6V1G2O95670 118 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 IL18BPO95998 194 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 NPPAP01160 153 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 PABPC4LP0CB38 370 aaKnown RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 TMIGD3P0DMS9 266 aaPredicted RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 FCGR2AP12318 317 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 BMP5P22003 454 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 SLC6A2P23975 617 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 CTSSP25774 331 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 PRKAR1BP31321 381 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 SFTPDP35247 375 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 EIF1AXP47813 144 aaKnown RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 IDH2P48735 452 aaKnown RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 GZMMP51124 257 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 PCBP3P57721 371 aaKnown RBP8.4□□□□□ -1.06
LDLR-211ENST00000560173 RBBP4Q09028 425 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 FOXF2Q12947 444 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 PON3Q15166 354 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 RABL3Q5HYI8 236 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 ZNF311Q5JNZ3 666 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 HBMQ6B0K9 141 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 OR2A2Q6IF42 318 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 NANOGP8Q6NSW7 305 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 C3orf33Q6P1S2 294 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 DHRS4L2Q6PKH6 230 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 GRINAQ7Z429 371 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 SERPINA11Q86U17 422 aa8.4□□□□□ -1.06
LDLR-211ENST00000560173 CALHM3Q86XJ0 350 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms