RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 SLC44A2Q8IWA5 706 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-214ENST00000554604 OFCC1Q8IZS5 231 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 C8orf59Q8N0T1 100 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-214ENST00000554604 GEMIN6Q8WXD5 167 aaKnown RBP11.3□□□□□ -0.6
SHMT2-214ENST00000554604 HGDQ93099 445 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 VSTM2LQ96N03 204 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 MUS81Q96NY9 551 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 ZNF300Q96RE9 604 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-214ENST00000554604 NODALQ96S42 347 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 ADOQ96SZ5 270 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 AMBRA1Q9C0C7 1298 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 GALNT9Q9HCQ5 603 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 DDX18Q9NVP1 670 aaKnown RBP11.3□□□□□ -0.6
SHMT2-214ENST00000554604 FAM215AQ9Y5M1 114 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 U3KQV3 271 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 CCDC168Q8NDH2 2452 aa11.3□□□□□ -0.6
SHMT2-214ENST00000554604 MPDZO75970 2070 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 A0A087WV62 115 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 LOC100130705A0A1B0GUX0 176 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 NKX2-6A6NCS4 301 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 C2orf72A6NCS6 295 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 TMEM247A6NEH6 219 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 C5orf58C9J3I9 102 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 HMGN4O00479 90 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 CLIC3O95833 236 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 OPN1SWP03999 348 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 HPNP05981 417 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 GLI4P10075 376 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 PRKACGP22612 351 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 IGFBP5P24593 272 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 GPC1P35052 558 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 KHKP50053 298 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 PPP1R8Q12972 351 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 TOP3AQ13472 1001 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 EFR3AQ14156 821 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 SF3B4Q15427 424 aaKnown RBP eCLIP11.29□□□□□ -0.65e-8■■■■■ 52.3
SHMT2-214ENST00000554604 ZNHIT3Q15649 155 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 RBM48Q5RL73 367 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 ZNF691Q5VV52 312 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 RTL6Q6ICC9 239 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 MEX3BQ6ZN04 569 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 TSEN54Q7Z6J9 526 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 PM20D2Q8IYS1 436 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 PIK3C3Q8NEB9 887 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 OR56A1Q8NGH5 318 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 MIPOL1Q8TD10 442 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 SLC38A5Q8WUX1 472 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 HDAC2Q92769 488 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 DGCR14Q96DF8 476 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 DTNBP1Q96EV8 351 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 UCK2Q9BZX2 261 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 GRIP2Q9C0E4 1043 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 UBQLN3Q9H347 655 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 NDUFAF4Q9P032 175 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 PDP1Q9P0J1 537 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 SLC6A5Q9Y345 797 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 HSPE1-MOB4S4R3N1 261 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 SPG11Q96JI7 2443 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 MED12LQ86YW9 2145 aa11.29□□□□□ -0.6
SHMT2-214ENST00000554604 ANKHD1Q8IWZ3 2542 aaKnown RBP11.29□□□□□ -0.6
SHMT2-214ENST00000554604 AHRRA9YTQ3 701 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 SNPHO15079 494 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 CBR3O75828 277 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 DIRAS1O95057 198 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 BCHEP06276 602 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 CD247P20963 164 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 RRM2P31350 389 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 RYKP34925 604 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 DAPP51397 102 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 PNLIPRP2P54317 469 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 CRYZQ08257 329 aaKnown RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 TP53BP2Q13625 1128 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 KEAP1Q14145 624 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 MAPK11Q15759 364 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 EIPR1Q53HC9 387 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 WIPI1Q5MNZ9 446 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 ANKRD34AQ69YU3 496 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 TNFAIP8L2Q6P589 184 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 NPSR1Q6W5P4 371 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 CYP4Z1Q86W10 505 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 SETD9Q8NE22 299 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 FAM83FQ8NEG4 500 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 OR4C15Q8NGM1 316 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 OR14L1PQ8NHC6 308 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 FBLIM1Q8WUP2 373 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 RASSF5Q8WWW0 418 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 EFHD2Q96C19 240 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 ELP4Q96EB1 424 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 SLC35A4Q96G79 324 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 TMEM19Q96HH6 336 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 TIMP4Q99727 224 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 SPOCK3Q9BQ16 436 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 PSD2Q9BQI7 771 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 YIPF3Q9GZM5 350 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 RBM38Q9H0Z9 239 aaKnown RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 SERHL2Q9H4I8 314 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 ZCCHC3Q9NUD5 404 aaKnown RBP11.28□□□□□ -0.6
SHMT2-214ENST00000554604 EXD2Q9NVH0 621 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 P2RX2Q9UBL9 471 aa11.28□□□□□ -0.6
SHMT2-214ENST00000554604 C19orf53Q9UNZ5 99 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms