RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 ACER3Q9NUN7 267 aa11.32□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF701Q9NV72 531 aaPredicted RBP11.32□□□□□ -0.6
LINC00643-202ENST00000553426 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.32□□□□□ -0.6
LINC00643-202ENST00000553426 V9GYY5 206 aaPredicted RBP11.32□□□□□ -0.6
LINC00643-202ENST00000553426 ROS1P08922 2347 aa11.32□□□□□ -0.6
LINC00643-202ENST00000553426 TRIM64A6NGJ6 449 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 TRIM64BA6NI03 449 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 ESPNB1AK53 854 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 C9JVG2 144 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 E9PBE3 544 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 SMAD9O15198 467 aaKnown RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 DNAJA2O60884 412 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 DHRS4L1P0CG22 281 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 UQCRBP14927 111 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 HTR3AP46098 478 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 CLK1P49759 484 aaKnown RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 KCNJ10P78508 379 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 TXNL4AP83876 142 aaKnown RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 PPP2R2BQ00005 443 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 GNA13Q14344 377 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 CASP8Q14790 479 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 STK11Q15831 433 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 ETFDHQ16134 617 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 FAM174BQ3ZCQ3 159 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 SPANXN4Q5MJ08 99 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 CEP85LQ5SZL2 805 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 NCMAPQ5T1S8 102 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 HHATQ5VTY9 493 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 SAXO2Q658L1 398 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 TYW3Q6IPR3 259 aaKnown RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 GRINAQ7Z429 371 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 MTDHQ86UE4 582 aaKnown RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 P2RY8Q86VZ1 359 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 UBE2J2Q8N2K1 259 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 ARFGAP2Q8N6H7 521 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 RAB3IL1Q8TBN0 382 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 PIWIL2Q8TC59 973 aaKnown RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 RAB8BQ92930 207 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF775Q96BV0 537 aaPredicted RBP11.31□□□□□ -0.6
LINC00643-202ENST00000553426 SORT1Q99523 831 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 ZBTB18Q99592 522 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 PARD6BQ9BYG5 372 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 SAP130Q9H0E3 1048 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 MEAF6Q9HAF1 191 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 FAIMQ9NVQ4 179 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 CHRNA9Q9UGM1 479 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 KCNE5Q9UJ90 142 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 LIPT1Q9Y234 373 aa11.31□□□□□ -0.6
LINC00643-202ENST00000553426 NSD1Q96L73 2696 aaPredicted RBP11.3□□□□□ -0.6
LINC00643-202ENST00000553426 A0A1W2PP18 115 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 TRPC5OSA6NMA1 111 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF814B7Z6K7 855 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 GPR171O14626 319 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 DNPH1O43598 174 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 SCN2BO60939 215 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 LYZL6O75951 148 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 H6PDO95479 791 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 GGT1P19440 569 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 PGM1P36871 562 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 PDK3Q15120 406 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 PPA1Q15181 289 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 MAPK14Q16539 360 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 FRRS1Q6ZNA5 592 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 OLIG3Q7RTU3 272 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 CMIPQ8IY22 773 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 CIARTQ8N365 385 aaPredicted RBP11.3□□□□□ -0.6
LINC00643-202ENST00000553426 FAM71CQ8NEG0 241 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 PIGXQ8TBF5 258 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 SMAP2Q8WU79 429 aaPredicted RBP11.3□□□□□ -0.6
LINC00643-202ENST00000553426 IGFBPL1Q8WX77 278 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 CCDC115Q96NT0 180 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 TRNT1Q96Q11 434 aaKnown RBP11.3□□□□□ -0.6
LINC00643-202ENST00000553426 PANX1Q96RD7 426 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 C20orf27Q9GZN8 174 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 ALG2Q9H553 416 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 EXOSC3Q9NQT5 275 aaKnown RBP11.3□□□□□ -0.6
LINC00643-202ENST00000553426 BTNL2Q9UIR0 455 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 HAO1Q9UJM8 370 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 NOSIPQ9Y314 301 aaKnown RBP11.3□□□□□ -0.6
LINC00643-202ENST00000553426 HDGFL3Q9Y3E1 203 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 HEATR5AQ86XA9 2040 aa11.3□□□□□ -0.6
LINC00643-202ENST00000553426 CENPVL1A0A0U1RR11 272 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 CCDC154A6NI56 674 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 PMS2P2O95744 297 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 IDUAP35475 653 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 NME5P56597 212 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 PHC1P78364 1004 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 BSPH1Q075Z2 132 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 BST1Q10588 318 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 TIMM23BQ5SRD1 257 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 FBXW9Q5XUX1 488 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 AP1ARQ63HQ0 302 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 OGFOD2Q6N063 350 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF621Q6ZSS3 439 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 SPATA19Q7Z5L4 167 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 RNF130Q86XS8 419 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 PMM1Q92871 262 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 APH1AQ96BI3 265 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF524Q96C55 264 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 DDIT4LQ96D03 193 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms