RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 NCCRP1Q6ZVX7 275 aaPredicted RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 PFN4Q8NHR9 129 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 ASB15Q8WXK1 588 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 C19orf43Q9BQ61 176 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 TXNL4BQ9NX01 149 aaKnown RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 TESQ9UGI8 421 aaKnown RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 TEX13CA0A0J9YWL9 993 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 ZC3H12DA2A288 527 aaKnown RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 DCDC2BA2VCK2 349 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 PRAMEF4O60810 478 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 UCHL1P09936 223 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 AQP2P41181 271 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 KCNAB1Q14722 419 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 PRAMEF9Q5VWM5 478 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 ZNF836Q6ZNA1 936 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 OR10A5Q9H207 317 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 YARS2Q9Y2Z4 477 aaKnown RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 GOLGB1Q14789 3259 aaKnown RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 VASPP50552 380 aaPredicted RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 PSMA6P60900 246 aaKnown RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 SNTA1Q13424 505 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 SMCO1Q147U7 214 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 MLF2Q15773 248 aaPredicted RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 SYT14P1Q58G82 188 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 CCDC80Q76M96 950 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 ACOT12Q8WYK0 555 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 PMM1Q92871 262 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 NMNAT3Q96T66 252 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 OR10A4Q9H209 315 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 FOLH1BQ9HBA9 442 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 NUDT15Q9NV35 164 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 PTPRFP10586 1907 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 SPTBP11277 2137 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 SYT5O00445 386 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 CPNE6O95741 557 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PNMTP11086 282 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PRKAR1BP31321 381 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 MAGEA2P43356 314 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 FXYD6P3P58550 94 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PRAMEF8Q5VWM4 474 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PRAMEF7Q5VXH5 474 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 LSM14AQ8ND56 463 aaKnown RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 LINC00615Q96LM1 132 aaPredicted RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 HHATLQ9HCP6 504 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 SLC16A7O60669 478 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 CSTBP04080 98 aaKnown RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 SCG5P05408 212 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 OR8G3PP0DMU2 310 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PRPH2P23942 346 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 MAGEA8P43361 318 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 ZNF322Q6U7Q0 402 aaPredicted RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 OR5L2Q8NGL0 311 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 SDF2Q99470 211 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PITX2Q99697 317 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 SLC6A20Q9NP91 592 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 WASH6PQ9NQA3 447 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PLEKHA6Q9Y2H5 1048 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 KLK4Q9Y5K2 254 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 C13orf42A0A1B0GVH6 325 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 SLC2A10O95528 541 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 APEX1P27695 318 aaKnown RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 AQP6Q13520 282 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 EEF1A1P5Q5VTE0 462 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 KCTD9Q7L273 389 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 NXPE2Q96DL1 559 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 TCTN2Q96GX1 697 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 LRRC3BQ96PB8 259 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 CHST8Q9H2A9 424 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 NT5DC2Q9H857 520 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 RTTNQ86VV8 2226 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 OTOL1A6NHN0 477 aaPredicted RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 ACOD1A6NK06 481 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 RBMXL2O75526 392 aaKnown RBP15.11■□□□□ 0.01
CUX1-213ENST00000549414 OR7A5Q15622 319 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 PISDQ9UG56 409 aa15.11■□□□□ 0.01
CUX1-213ENST00000549414 H2AFB2P0C5Z0 115 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 IL7P13232 177 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 FRKP42685 505 aaPredicted RBP15.1■□□□□ 0.01
CUX1-213ENST00000549414 TRIM61Q5EBN2 209 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 MED25Q71SY5 747 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 ZNF595Q8IYB9 648 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 ASCC1Q8N9N2 400 aaKnown RBP15.1■□□□□ 0.01
CUX1-213ENST00000549414 CSF3RQ99062 836 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 ELF4Q99607 663 aaPredicted RBP15.1■□□□□ 0.01
CUX1-213ENST00000549414 TEX101Q9BY14 249 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 ASB6Q9NWX5 421 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 PFDN2Q9UHV9 154 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 CORINQ9Y5Q5 1042 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 KCNE3Q9Y6H6 103 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 TRAV18A0A075B6X5 111 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 OR5K3A6NET4 321 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 NPIPA2E9PIF3 369 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 NPIPA3F8WFD2 350 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 SHC1P29353 583 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 CLDN12P56749 244 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 KIAA1024LP59773 190 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 SLC18B1Q6NT16 456 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 ALDH16A1Q8IZ83 802 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 LINC01555Q8NAE3 123 aa15.1■□□□□ 0.01
CUX1-213ENST00000549414 UCN3Q969E3 161 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms