RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ZNF540Q8NDQ6 660 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 SEMA6DQ8NFY4 1073 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 OR52E4Q8NGH9 312 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 OR5W2Q8NH69 310 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 ZFP28Q8NHY6 868 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 ZFAND2BQ8WV99 257 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 CDS1Q92903 461 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 CHMP6Q96FZ7 201 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 PAFAH2Q99487 392 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 IQCGQ9H095 443 aaKnown RBP11.13□□□□□ -0.63
SCAF11-208ENST00000546534 RAB17Q9H0T7 212 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 SLC17A5Q9NRA2 495 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 TMEM216Q9P0N5 145 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 STK38LQ9Y2H1 464 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 ARFGEF3Q5TH69 2177 aa11.13□□□□□ -0.63
SCAF11-208ENST00000546534 A0A0A6YYJ9 748 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 SLCO1B7G3V0H7 640 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 SULT2B1O00204 365 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 AKAP10O43572 662 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 SLU7O95391 586 aaKnown RBP11.12□□□□□ -0.63
SCAF11-208ENST00000546534 SNRPBP14678 240 aaKnown RBP11.12□□□□□ -0.63
SCAF11-208ENST00000546534 ATP6V1C1P21283 382 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 FRKP42685 505 aaPredicted RBP11.12□□□□□ -0.63
SCAF11-208ENST00000546534 COMPP49747 757 aaPredicted RBP11.12□□□□□ -0.63
SCAF11-208ENST00000546534 PRKAA2P54646 552 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 SNRPD2P62316 118 aaKnown RBP11.12□□□□□ -0.63
SCAF11-208ENST00000546534 ACTG1P63261 375 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 TIGD2Q4W5G0 525 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 CDC73Q6P1J9 531 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 MTDHQ86UE4 582 aaKnown RBP11.12□□□□□ -0.63
SCAF11-208ENST00000546534 TMCO5AQ8N6Q1 288 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 LINC01356Q8N9X3 169 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 PPCDCQ96CD2 204 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 HOXD1Q9GZZ0 328 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 PIGUQ9H490 435 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 GSTO2Q9H4Y5 243 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 MID1IP1Q9NPA3 183 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 DUSP22Q9NRW4 184 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 AMDHD2Q9Y303 409 aa11.12□□□□□ -0.63
SCAF11-208ENST00000546534 NPIPB8E9PQR5 432 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 PDLIM1O00151 329 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 GPR171O14626 319 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 MRPL33O75394 65 aaKnown RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 SEC22BO75396 215 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 RSL1D1O76021 490 aaKnown RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 STAMBPO95630 424 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 HMGN2P05204 90 aaKnown RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 TACSTD2P09758 323 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 EFNA1P20827 205 aaPredicted RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ATP5F1P24539 256 aaPredicted RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 GIFP27352 417 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 APEX1P27695 318 aaKnown RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 SERPINF1P36955 418 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 CCR4P51679 360 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 CHN2P52757 468 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ATP12AP54707 1039 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 CSNK2A1P68400 391 aaPredicted RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 POU4F2Q12837 409 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 LASP1Q14847 261 aaKnown RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 KIAA0040Q15053 153 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 RINLQ6ZS11 566 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 C17orf78Q8N4C9 275 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ZNF614Q8N883 585 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 TOR1AIP2Q8NFQ8 470 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 DCAKDQ8WVC6 231 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ARL8AQ96BM9 186 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 FAM120BQ96EK7 910 aaKnown RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 L3HYPDHQ96EM0 354 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ZNF764Q96H86 408 aaPredicted RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 STACQ99469 402 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 FUT8Q9BYC5 575 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 REEP4Q9H6H4 257 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 METTL17Q9H7H0 456 aaPredicted RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ACSS1Q9NUB1 689 aaPredicted RBP11.11□□□□□ -0.63
SCAF11-208ENST00000546534 ZDHHC18Q9NUE0 388 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 SH3BP4Q9P0V3 963 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 CCL27Q9Y4X3 112 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 KCNE3Q9Y6H6 103 aa11.11□□□□□ -0.63
SCAF11-208ENST00000546534 POC1B-GALNT4F8VUJ3 575 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 NPIPB9F8W1W9 429 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 ZNF264O43296 627 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 EIF4E2O60573 245 aaKnown RBP11.1□□□□□ -0.63
SCAF11-208ENST00000546534 TBX19O60806 448 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 CDH15P55291 814 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SESN3P58005 492 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 MERTKQ12866 999 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 CBFBQ13951 182 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SYT14P1Q58G82 188 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 DCST2Q5T1A1 773 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SPATA19Q7Z5L4 167 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SLC22A9Q8IVM8 553 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 CCNYL1Q8N7R7 359 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 GCDHQ92947 438 aaPredicted RBP11.1□□□□□ -0.63
SCAF11-208ENST00000546534 DNAJA3Q96EY1 480 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SNX18Q96RF0 628 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 THUMPD3Q9BV44 507 aaKnown RBP11.1□□□□□ -0.63
SCAF11-208ENST00000546534 KCNF1Q9H3M0 494 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 RRAGDQ9NQL2 400 aaPredicted RBP11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SERINC1Q9NRX5 453 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 SLC7A10Q9NS82 523 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms