RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	DIRAS1	O95057	198 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR5F1	O95221	314 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ACTL6A	O96019	429 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	IGHG3	P01860	377 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	MT-ND1	P03886	318 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ABO	P16442	354 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CHM	P24386	653 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC7A1	P30825	629 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SFTPD	P35247	375 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	PTGS2	P35354	604 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CDH12	P55289	794 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	B3GALT5-AS1	P59052	145 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	RAC1	P63000	192 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	RBPJ	Q06330	500 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CCNI	Q14094	377 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMEM176B	Q3YBM2	270 aa	Predicted RBP	9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC25A53	Q5H9E4	307 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF324B	Q6AW86	544 aa	Predicted RBP	9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF613	Q6PF04	617 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CHMP1B	Q7LBR1	199 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	C10orf67	Q8IYJ2	551 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ADGRG5	Q8IZF4	528 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	LILRA2	Q8N149	483 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	MEIOB	Q8N635	442 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	LSMEM1	Q8N8F7	131 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ADAMTS16	Q8TE57	1224 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CANT1	Q8WVQ1	401 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	C3orf49	Q96BT1	292 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRRC1	Q96M27	445 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF347	Q96SE7	839 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	NPAS1	Q99742	590 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLX1A	Q9BQ83	275 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CHID1	Q9BWS9	393 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	POLR2J2	Q9GZM3	115 aa	Known RBP	9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ADAM19	Q9H013	955 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	POLR2J3	Q9H1A7	115 aa	Known RBP	9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	MAGIX	Q9H6Y5	334 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	YY1AP1	Q9H869	796 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	IL1RAP	Q9NPH3	570 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	NDUFAF4	Q9P032	175 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SPRR3	Q9UBC9	169 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CHRNA9	Q9UGM1	479 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	RIMS3	Q9UJD0	308 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	OSGIN1	Q9UJX0	560 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC7A7	Q9UM01	511 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	CAMK2A	Q9UQM7	478 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	AP4B1	Q9Y6B7	739 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ATRX	P46100	2492 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A0B4J2E0	115 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A1B0GVC2	190 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A1B0GX12	115 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	TCRBV3S1	A0A5B6	114 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMEM72	A0PK05	275 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	GJE1	A6NN92	205 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	EIF1AY	O14602	144 aa	Known RBP	9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	GNGT2	O14610	69 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	EFNA2	O43921	213 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	WISP1	O95388	367 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	RAP2A	P10114	183 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	PNMT	P11086	282 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	EDN3	P14138	238 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	RHCE	P18577	417 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	IL11	P20809	199 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ELK4	P28324	431 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	GFRA1	P56159	465 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	SMIM11A	P58511	58 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ACTR3	P61158	418 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	VLDLR	P98155	873 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	SPIB	Q01892	262 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ST3GAL3	Q11203	375 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	SELENBP1	Q13228	472 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMEM44	Q2T9K0	475 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	PDSS1	Q5T2R2	415 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	WLS	Q5T9L3	541 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	PPP4R4	Q6NUP7	873 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	GDF7	Q7Z4P5	450 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ATG4D	Q86TL0	474 aa	Predicted RBP	9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ADGRG3	Q86Y34	549 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF843	Q8N446	348 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR5M9	Q8NGP3	310 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	DDIT4L	Q96D03	193 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	C7orf34	Q96L11	122 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR5B2	Q96R09	309 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF300	Q96RE9	604 aa	Predicted RBP	9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	TIMP4	Q99727	224 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	PIP5K1A	Q99755	562 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	DENND2D	Q9H6A0	471 aa	Predicted RBP	9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	A4GNT	Q9UNA3	340 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	TESMIN	Q9Y4I5	508 aa		9.17	□□□□□ -0.94
CPSF7-221	ENST00000543545	TLN1	Q9Y490	2541 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	NIN	Q8N4C6	2090 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR14I1	A6ND48	311 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545		A8MVM7	634 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545		H0Y3Z8	333 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	ETV2	O00321	342 aa	Predicted RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	BCKDK	O14874	412 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	CHP2	O43745	196 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	FKBP6	O75344	327 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	NTN1	O95631	604 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	SEMG1	P04279	462 aa		9.16	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms