RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 LIPT1Q9Y234 373 aa11.65□□□□□ -0.54
RTN3-212ENST00000543123 GPR171O14626 319 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 SMAD7O15105 426 aaKnown RBP11.64□□□□□ -0.55
RTN3-212ENST00000543123 SMAD9O15198 467 aaKnown RBP11.64□□□□□ -0.55
RTN3-212ENST00000543123 H6PDO95479 791 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 LY6G6DO95868 133 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 DHRS4L1P0CG22 281 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 TFPIP10646 304 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 UQCRBP14927 111 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 HTR3AP46098 478 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 CLK1P49759 484 aaKnown RBP11.64□□□□□ -0.55
RTN3-212ENST00000543123 PPP2R2BQ00005 443 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 CASP8Q14790 479 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 PDK3Q15120 406 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 FAM174BQ3ZCQ3 159 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 GPAT3Q53EU6 434 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 SPANXN4Q5MJ08 99 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 NCMAPQ5T1S8 102 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 AP1ARQ63HQ0 302 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 TYW3Q6IPR3 259 aaKnown RBP11.64□□□□□ -0.55
RTN3-212ENST00000543123 OGFOD2Q6N063 350 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 TMPPEQ6ZT21 453 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 GRINAQ7Z429 371 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 P2RY8Q86VZ1 359 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 CMIPQ8IY22 773 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 CLEC4FQ8N1N0 589 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 ARFGAP2Q8N6H7 521 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 FAM71CQ8NEG0 241 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 PIGXQ8TBF5 258 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 CCDC115Q96NT0 180 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 ZBTB18Q99592 522 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 SLC35A5Q9BS91 424 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 SAP130Q9H0E3 1048 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 QRSL1Q9H0R6 528 aaKnown RBP11.64□□□□□ -0.55
RTN3-212ENST00000543123 MEAF6Q9HAF1 191 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.64□□□□□ -0.55
RTN3-212ENST00000543123 FAIMQ9NVQ4 179 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 CHRNA9Q9UGM1 479 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 BTNL2Q9UIR0 455 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 KCNE5Q9UJ90 142 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 LAMP3Q9UQV4 416 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 HDGFL3Q9Y3E1 203 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 ZANQ9Y493 2812 aa11.64□□□□□ -0.55
RTN3-212ENST00000543123 TLN2Q9Y4G6 2542 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 HIVEP2P31629 2446 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 IGKV3D-15A0A087WSY6 115 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 TRIM64A6NGJ6 449 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 TRIM64BA6NI03 449 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 SCN2BO60939 215 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 PMS2P2O95744 297 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 PLAUP00749 431 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 GGT1P19440 569 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 COX5AP20674 150 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 BGNP21810 368 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 PGM1P36871 562 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 PPA1Q15181 289 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 TSC22D1Q15714 1073 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 STK11Q15831 433 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 TIMM23BQ5SRD1 257 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 CEP85LQ5SZL2 805 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 HHATQ5VTY9 493 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 ABLIM2Q6H8Q1 611 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 SPATA19Q7Z5L4 167 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 MTDHQ86UE4 582 aaKnown RBP11.63□□□□□ -0.55
RTN3-212ENST00000543123 RAB3IL1Q8TBN0 382 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 PIWIL2Q8TC59 973 aaKnown RBP11.63□□□□□ -0.55
RTN3-212ENST00000543123 PMM1Q92871 262 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 RAB8BQ92930 207 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 GTPBP3Q969Y2 492 aaKnown RBP11.63□□□□□ -0.55
RTN3-212ENST00000543123 RADILQ96JH8 1075 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 TRNT1Q96Q11 434 aaKnown RBP11.63□□□□□ -0.55
RTN3-212ENST00000543123 PANX1Q96RD7 426 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 SORT1Q99523 831 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 PAIP2Q9BPZ3 127 aaKnown RBP11.63□□□□□ -0.55
RTN3-212ENST00000543123 CCDC106Q9BWC9 280 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.63□□□□□ -0.55
RTN3-212ENST00000543123 V9GYY5 206 aaPredicted RBP11.63□□□□□ -0.55
RTN3-212ENST00000543123 HEATR5AQ86XA9 2040 aa11.63□□□□□ -0.55
RTN3-212ENST00000543123 CENPVL1A0A0U1RR11 272 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 A0A1W2PP18 115 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 TRPC5OSA6NMA1 111 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 ZNF814B7Z6K7 855 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 LYZL6O75951 148 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 RYKP34925 604 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 MAGEA8P43361 318 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 MAP2K6P52564 334 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 CASP9P55211 416 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 KCNJ10P78508 379 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 BSPH1Q075Z2 132 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 MAPK14Q16539 360 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 ZNF672Q499Z4 452 aaPredicted RBP11.62□□□□□ -0.55
RTN3-212ENST00000543123 FRRS1Q6ZNA5 592 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 UBE2J2Q8N2K1 259 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 CIARTQ8N365 385 aaPredicted RBP11.62□□□□□ -0.55
RTN3-212ENST00000543123 GLB1L3Q8NCI6 653 aaPredicted RBP11.62□□□□□ -0.55
RTN3-212ENST00000543123 SMAP2Q8WU79 429 aaPredicted RBP11.62□□□□□ -0.55
RTN3-212ENST00000543123 APH1AQ96BI3 265 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 DDIT4LQ96D03 193 aa11.62□□□□□ -0.55
RTN3-212ENST00000543123 ZNF300Q96RE9 604 aaPredicted RBP11.62□□□□□ -0.55
RTN3-212ENST00000543123 PARD6BQ9BYG5 372 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms