RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PTGFRNQ9P2B2 879 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SEC14L3Q9UDX4 400 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TESQ9UGI8 421 aaKnown RBP6.11□□□□□ -1.43
USP28-202ENST00000535607 NDRG3Q9UGV2 375 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 MLXQ9UH92 298 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CLEC2DQ9UHP7 191 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 KCND3Q9UK17 655 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 POMT2Q9UKY4 750 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SLC9A8Q9Y2E8 581 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 PLXNA3P51805 1871 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 GAGE12BA1L429 117 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 MTMR11A4FU01 709 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 GAGE12HA6NDE8 117 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 ANKRD61A6NGH8 418 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 PCP4L1A6NKN8 68 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 A8MXK9 166 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 H0YIV9 168 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 H3BNC9 293 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SMLR1H3BR10 107 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 GPR171O14626 319 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 YKT6O15498 198 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 PI15O43692 258 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 TLR5O60602 858 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 NME6O75414 186 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 SOX30O94993 753 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 UBL3O95164 117 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 NFATC1O95644 943 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 IFNA4P05014 189 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 S100A9P06702 114 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 PRSS56P0CW18 603 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SAGP10523 405 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 LAMP1P11279 417 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 PPP3CBP16298 524 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 PPP2R1BP30154 601 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 ATP6V1E1P36543 226 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SPAM1P38567 509 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 ETV5P41161 510 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 GDF5P43026 501 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 AVPR1BP47901 424 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 MMP15P51511 669 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 WNT3P56703 355 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 RPS25P62851 125 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 HSD11B2P80365 405 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 MRPS10P82664 201 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 TWF1Q12792 350 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 CHIT1Q13231 466 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SLC14A1Q13336 389 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 NFATC2Q13469 925 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 CAMK2DQ13557 499 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 CDH18Q13634 790 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 DDX39BQ13838 428 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 GK2Q14410 553 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 GINS1Q14691 196 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SEC23BQ15437 767 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 C18orf21Q32NC0 220 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 LGALSLQ3ZCW2 172 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 XKR6Q5GH73 641 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 NHLRC3Q5JS37 347 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 C10orf120Q5SQS8 335 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 PLEKHS1Q5SXH7 462 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 IDNKQ5T6J7 187 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 C1QL3Q5VWW1 255 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 ZNF770Q6IQ21 691 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 GRHL2Q6ISB3 625 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SLC27A4Q6P1M0 643 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 DEF8Q6ZN54 512 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 CFAP77Q6ZQR2 320 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 ASB18Q6ZVZ8 466 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 TRILQ7L0X0 811 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 OAFQ86UD1 273 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 TSPAN33Q86UF1 283 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 CLECL1Q8IZS7 167 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 CFAP52Q8N1V2 620 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 C10orf111Q8N326 155 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SPICQ8N5J4 248 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 FAM71CQ8NEG0 241 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 OR2T35Q8NGX2 323 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 MOSPD2Q8NHP6 518 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SCAMP5Q8TAC9 235 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 GNPDA2Q8TDQ7 276 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SETD7Q8WTS6 366 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 SKA2Q8WVK7 121 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 OVCA2Q8WZ82 227 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 IGSF8Q969P0 613 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 FBXO32Q969P5 355 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 TMEM203Q969S6 136 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 UBE2E3Q969T4 207 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 TCEAL4Q96EI5 215 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 C11orf24Q96F05 449 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 GIMAP5Q96F15 307 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 TRMT61AQ96FX7 289 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 MRPL48Q96GC5 212 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 LRR1Q96L50 414 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 ZNF582Q96NG8 517 aaPredicted RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 RBP7Q96R05 134 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 SECISBP2Q96T21 854 aaKnown RBP6.1□□□□□ -1.43
USP28-202ENST00000535607 FNDC11Q9BVV2 318 aa6.1□□□□□ -1.43
USP28-202ENST00000535607 EBPLQ9BY08 206 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms