RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RBBP4Q09028 425 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 MERTKQ12866 999 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 CAPRIN1Q14444 709 aaKnown RBP11.62□□□□□ -0.55
VPS28-216ENST00000533806 TRMT5Q32P41 509 aaKnown RBP11.62□□□□□ -0.55
VPS28-216ENST00000533806 C3orf33Q6P1S2 294 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 GRINAQ7Z429 371 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 SPATA21Q7Z572 469 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 COMTD1Q86VU5 262 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 ZNF440Q8IYI8 595 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 SLC35B4Q969S0 331 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 MARVELD3Q96A59 401 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 LRRC58Q96CX6 371 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 ELAC2Q9BQ52 826 aaKnown RBP11.62□□□□□ -0.55
VPS28-216ENST00000533806 SRXN1Q9BYN0 137 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 MYLK2Q9H1R3 596 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 CTPS2Q9NRF8 586 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 FAM53CQ9NYF3 392 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 ZNF232Q9UNY5 417 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 HEATR5AQ86XA9 2040 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 DOCK7Q96N67 2140 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 PKDREJQ9NTG1 2253 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 GMNCA6NCL1 334 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 GJE1A6NN92 205 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 A8MXE2 369 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 SNX3O60493 162 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 TPST1O60507 370 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 GKN3PP0CG01 181 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 FCGR2AP12318 317 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 COX6B1P14854 86 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 FKBP2P26885 142 aaKnown RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 PRKAR1BP31321 381 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 HTR3AP46098 478 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 PCYT1AP49585 367 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 RAC3P60763 192 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 CYLC2Q14093 348 aaPredicted RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 SCARB2Q14108 478 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 LARS2Q15031 903 aaKnown RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 MAPRE2Q15555 327 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 SGCBQ16585 318 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 ZNF239Q16600 458 aaKnown RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 ZNF311Q5JNZ3 666 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 PDSS1Q5T2R2 415 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 REP15Q6BDI9 236 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 DHRS4L2Q6PKH6 230 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 FAM214BQ7L5A3 538 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 BTLAQ7Z6A9 289 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 SERPINA11Q86U17 422 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 SNX32Q86XE0 403 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 CALHM3Q86XJ0 350 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 ZZZ3Q8IYH5 903 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 OR8J3Q8NGG0 315 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 RP9Q8TA86 221 aaKnown RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 RNF128Q8TEB7 428 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 SLC25A43Q8WUT9 341 aaPredicted RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 RNASE6Q93091 150 aaKnown RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 SLC39A3Q9BRY0 314 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 PIGMQ9H3S5 423 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 CHRNA9Q9UGM1 479 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 OSGIN1Q9UJX0 560 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 ING1Q9UK53 422 aaPredicted RBP11.61□□□□□ -0.55
VPS28-216ENST00000533806 CAPN7Q9Y6W3 813 aa11.61□□□□□ -0.55
VPS28-216ENST00000533806 ANKHD1Q8IWZ3 2542 aaKnown RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 C5orf58C9J3I9 102 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 MRASO14807 208 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 CCDC22O60826 627 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 SS18L1O75177 396 aaPredicted RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 MFN2O95140 757 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 CD8BP10966 210 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 SLC6A2P23975 617 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 TACR3P29371 465 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 CLK1P49759 484 aaKnown RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 MAP2K6P52564 334 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 SYT14P1Q58G82 188 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 RABL3Q5HYI8 236 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 C8orf82Q6P1X6 216 aaPredicted RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 VWA1Q6PCB0 445 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 MEX3BQ6ZN04 569 aaKnown RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 TMPPEQ6ZT21 453 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 P4HA3Q7Z4N8 544 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 PIGWQ7Z7B1 504 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 MTDHQ86UE4 582 aaKnown RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 TREML1Q86YW5 311 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 C11orf65Q8NCR3 313 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 HIPK4Q8NE63 616 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 ATP6V1C2Q8NEY4 427 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 OR10A6Q8NH74 314 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 ZNF563Q8TA94 476 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 CPNE4Q96A23 557 aaPredicted RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 GMPPAQ96IJ6 420 aaPredicted RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 ARL5BQ96KC2 179 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 GPATCH1Q9BRR8 931 aaKnown RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 SERINC1Q9NRX5 453 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 GLRX2Q9NS18 164 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 FOXD3Q9UJU5 478 aaPredicted RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 PACSIN3Q9UKS6 424 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 MCTS1Q9ULC4 181 aaKnown RBP11.6□□□□□ -0.55
VPS28-216ENST00000533806 PDZD2O15018 2839 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 CSMD1Q96PZ7 3565 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 HCFC1P51610 2035 aa11.6□□□□□ -0.55
VPS28-216ENST00000533806 TMED7-TICAM2A0A0A6YYA0 188 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms