RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 ADAP00813 363 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 GSNP06396 782 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 IDO1P14902 403 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 LOXP28300 417 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-211ENST00000533492 DIO1P49895 249 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 FUT5Q11128 374 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 SYPL1Q16563 259 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 SYT14P1Q58G82 188 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 SFRP5Q5T4F7 317 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 AP1ARQ63HQ0 302 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF704Q6ZNC4 412 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-211ENST00000533492 GABRG1Q8N1C3 465 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 LRRC75A-AS1Q8N1F1 130 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 S100PBPQ96BU1 408 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF775Q96BV0 537 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-211ENST00000533492 ZHX1-C8orf76Q96EF9 292 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 TRNT1Q96Q11 434 aaKnown RBP13.73□□□□□ -0.21
CPSF1-211ENST00000533492 PSD2Q9BQI7 771 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 BCO1Q9HAY6 547 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 NGBQ9NPG2 151 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 DLL4Q9NR61 685 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 CTPS2Q9NRF8 586 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 FREM1Q5H8C1 2179 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 ROS1P08922 2347 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 FLNAP21333 2647 aaKnown RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 PRAMEF27A3QJZ7 478 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 RFXANKO14593 260 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 SMAD9O15198 467 aaKnown RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 CYTIPO60759 359 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 GCM2O75603 506 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 IL6P05231 212 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 NR2F1P10589 423 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 FKBP2P26885 142 aaKnown RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 CDKN2CP42773 168 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 GNA13Q14344 377 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 P2RY6Q15077 328 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 TSC22D1Q15714 1073 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 LRRC74BQ6ZQY2 392 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 GRINAQ7Z429 371 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 CMIPQ8IY22 773 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 ANKFN1Q8N957 763 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 FAM71CQ8NEG0 241 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 PNPT1Q8TCS8 783 aaKnown RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 KISS1RQ969F8 398 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 C18orf12Q96KH6 178 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 USB1Q9BQ65 265 aaKnown RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 CCDC106Q9BWC9 280 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 GSX1Q9H4S2 264 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 MTHFD2LQ9H903 347 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 TMBIM4Q9HC24 238 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 EXOSC3Q9NQT5 275 aaKnown RBP13.72□□□□□ -0.21
CPSF1-211ENST00000533492 CHRNA9Q9UGM1 479 aa13.72□□□□□ -0.21
CPSF1-211ENST00000533492 ZFHX3Q15911 3703 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 PRR14LQ5THK1 2151 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 AGAP5A6NIR3 686 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 CLDN24A6NM45 220 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 BCAS1O75363 584 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 ANP32DO95626 131 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 C1QCP02747 245 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 FESP07332 822 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 IL7RP16871 459 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 CCNA2P20248 432 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 ADSLP30566 484 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 HTR3AP46098 478 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 OR3A2P47893 321 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 IDH2P48735 452 aaKnown RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 ITGADQ13349 1161 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 CAPRIN1Q14444 709 aaKnown RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 GSTA3Q16772 222 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 SLC9B1Q4ZJI4 515 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 PDCD4Q53EL6 469 aaKnown RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 Q5PR19 223 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 GALNT5Q7Z7M9 940 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 BIVMQ86UB2 503 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 MTDHQ86UE4 582 aaKnown RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF100Q8IYN0 542 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 PIWIL2Q8TC59 973 aaKnown RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 HSD17B8Q92506 261 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 CNOT9Q92600 299 aaKnown RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 TLCD1Q96CP7 247 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 PERPQ96FX8 193 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF300Q96RE9 604 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-211ENST00000533492 SLC38A1Q9H2H9 487 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 EMC3Q9P0I2 261 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 HDGFL3Q9Y3E1 203 aa13.71□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF724A8MTY0 619 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 ZNF814B7Z6K7 855 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 UBDO15205 165 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 PLAUP00749 431 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 DBIP07108 87 aaKnown RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 CHRM4P08173 479 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 UQCRBP14927 111 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 CLK1P49759 484 aaKnown RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 COX20Q5RI15 118 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 BEND6Q5SZJ8 279 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 DNAJC14Q6Y2X3 702 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 Q6ZT83 130 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 BHLHA15Q7RTS1 189 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 ADGRG3Q86Y34 549 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 KRTAP1-3Q8IUG1 177 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms