RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 TFPIP10646 304 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 NID1P14543 1247 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 CRYGSP22914 178 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 FKBP2P26885 142 aaKnown RBP15.36■□□□□ 0.05
PHRF1-204ENST00000532550 IDH2P48735 452 aaKnown RBP15.36■□□□□ 0.05
PHRF1-204ENST00000532550 PAMR1Q6UXH9 720 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 TMPPEQ6ZT21 453 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 GRINAQ7Z429 371 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 PEX5LQ8IYB4 626 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 SLC25A43Q8WUT9 341 aaPredicted RBP15.36■□□□□ 0.05
PHRF1-204ENST00000532550 WDR60Q8WVS4 1066 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 CNOT9Q92600 299 aaKnown RBP15.36■□□□□ 0.05
PHRF1-204ENST00000532550 PIK3IP1Q96FE7 263 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 TACO1Q9BSH4 297 aaKnown RBP15.36■□□□□ 0.05
PHRF1-204ENST00000532550 CTPS2Q9NRF8 586 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 SLC6A13Q9NSD5 602 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 CALML5Q9NZT1 146 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 KLHL9Q9P2J3 617 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 KLHL13Q9P2N7 655 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 P2RX2Q9UBL9 471 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 FREM1Q5H8C1 2179 aa15.36■□□□□ 0.05
PHRF1-204ENST00000532550 ITPR3Q14573 2671 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 TMEM247A6NEH6 219 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 HMGB1P1B2RPK0 211 aaPredicted RBP15.35■□□□□ 0.05
PHRF1-204ENST00000532550 ETFAP13804 333 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 CCKARP32238 428 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 HTR3AP46098 478 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 DIO1P49895 249 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 IDH3AP50213 366 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 CSNK2A1P68400 391 aaPredicted RBP15.35■□□□□ 0.05
PHRF1-204ENST00000532550 RASGEF1BQ0VAM2 473 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 SYT14P1Q58G82 188 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 STAC2Q6ZMT1 411 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 NUFIP2Q7Z417 695 aaKnown RBP15.35■□□□□ 0.05
PHRF1-204ENST00000532550 CCDC106Q9BWC9 280 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 HDHD5Q9BXW7 423 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 CXXC4Q9H2H0 198 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 VIPAS39Q9H9C1 493 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 INTS9Q9NV88 658 aaKnown RBP15.35■□□□□ 0.05
PHRF1-204ENST00000532550 THUMPD1Q9NXG2 353 aaKnown RBP15.35■□□□□ 0.05
PHRF1-204ENST00000532550 CHRNA9Q9UGM1 479 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 GPR52Q9Y2T5 361 aa15.35■□□□□ 0.05
PHRF1-204ENST00000532550 MAP1AP78559 2803 aaPredicted RBP15.35■□□□□ 0.05
PHRF1-204ENST00000532550 DEFB108AA8MXU0 73 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 UQCRBP14927 111 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 CLK1P49759 484 aaKnown RBP15.34■□□□□ 0.05
PHRF1-204ENST00000532550 MVDP53602 400 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 CRISP3P54108 245 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 AQP5P55064 265 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 DSTNP60981 165 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 PPP2R2AP63151 447 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 C22orf34Q6ZV56 151 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 ADGRG3Q86Y34 549 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 GTF2H4Q92759 462 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 MBD6Q96DN6 1003 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 ALPK1Q96QP1 1244 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 EBF4Q9BQW3 602 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 CCDC28BQ9BUN5 200 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 RAD21L1Q9H4I0 556 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 ZNF232Q9UNY5 417 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 PCDHB14Q9Y5E9 798 aa15.34■□□□□ 0.05
PHRF1-204ENST00000532550 A0A1W2PPR1 153 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 CFAP73A6NFT4 308 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 CYTIPO60759 359 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 ATE1O95260 518 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 TFPTP0C1Z6 253 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 CCNA2P20248 432 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 RPS4Y1P22090 263 aaKnown RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 MRPL19P49406 292 aaKnown RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 DEFB113Q30KQ7 82 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 GTDC1Q4AE62 458 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 MRPL2Q5T653 305 aaKnown RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 SLC2A7Q6PXP3 512 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 MTDHQ86UE4 582 aaKnown RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 ZNF440Q8IYI8 595 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 STEAP2Q8NFT2 490 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 OR52P1PQ8NH57 321 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 SLC38A5Q8WUX1 472 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 ZNF775Q96BV0 537 aaPredicted RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 ZHX1-C8orf76Q96EF9 292 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 AURKBQ96GD4 344 aaPredicted RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 PSD2Q9BQI7 771 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 ACTR6Q9GZN1 396 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 OR10A4Q9H209 315 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 BCO1Q9HAY6 547 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 CACYBPQ9HB71 228 aaKnown RBP15.33■□□□□ 0.04
PHRF1-204ENST00000532550 HDGFL3Q9Y3E1 203 aa15.33■□□□□ 0.04
PHRF1-204ENST00000532550 A0A0G2JPF8 293 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 HNRNPCL2B2RXH8 293 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 HNRNPCL3B7ZW38 293 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 CLIC1O00299 241 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 AP3D1O14617 1153 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 SMAD9O15198 467 aaKnown RBP15.32■□□□□ 0.04
PHRF1-204ENST00000532550 SIAH2O43255 324 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 HNRNPCL1O60812 293 aaKnown RBP15.32■□□□□ 0.04
PHRF1-204ENST00000532550 ADAM11O75078 769 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 BCHEP06276 602 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 HNRNPCL4P0DMR1 293 aa15.32■□□□□ 0.04
PHRF1-204ENST00000532550 PSMB1P20618 241 aaKnown RBP15.32■□□□□ 0.04
PHRF1-204ENST00000532550 SLC1A3P43003 542 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms