RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 UGT2B17O75795 530 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 PGM3O95394 542 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 CSTAP01040 98 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 IGHV4-39P01824 125 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 GUSBP08236 651 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 UBTFL6P0CB48 400 aaPredicted RBP10.03□□□□□ -0.8
VPS28-214ENST00000531032 PGCP20142 388 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 ACVR1BP36896 505 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 ETV4P43268 484 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 SESN3P58005 492 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 CSNK2A1P68400 391 aaPredicted RBP10.03□□□□□ -0.8
VPS28-214ENST00000531032 MERTKQ12866 999 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 FAPQ12884 760 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 PDK3Q15120 406 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 GPR68Q15743 365 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 STK11Q15831 433 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 SMU1Q2TAY7 513 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 SYT14P1Q58G82 188 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 AP1ARQ63HQ0 302 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 TMPPEQ6ZT21 453 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 GALNT5Q7Z7M9 940 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 CROCCP2Q86T23 111 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 P2RY8Q86VZ1 359 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 CLECL1Q8IZS7 167 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 CLEC4FQ8N1N0 589 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 FAM71CQ8NEG0 241 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 SLC25A43Q8WUT9 341 aaPredicted RBP10.03□□□□□ -0.8
VPS28-214ENST00000531032 TMEM234Q8WY98 164 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 MUCL1Q96DR8 90 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 SLC35G5Q96KT7 338 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 ZIM3Q96PE6 472 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 SERINC1Q9NRX5 453 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 ACER3Q9NUN7 267 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 CISD1Q9NZ45 108 aaKnown RBP10.03□□□□□ -0.8
VPS28-214ENST00000531032 NPAP1Q9NZP6 1156 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 EMC3Q9P0I2 261 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 MKLN1Q9UL63 735 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 ABCA1O95477 2261 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 OR5H1A6NKK0 313 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 C9JVG2 144 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 SULT2B1O00204 365 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 TYROBPO43914 113 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 SCN2BO60939 215 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 ERLIN1O75477 346 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 CYP7B1O75881 506 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 CREB1P16220 341 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 GGT1P19440 569 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 PGM1P36871 562 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 CDH11P55287 796 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 MAPK14Q16539 360 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 PGS1Q32NB8 556 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 FBXW9Q5XUX1 488 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 OR4F3Q6IEY1 312 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 EIF3MQ7L2H7 374 aaKnown RBP10.02□□□□□ -0.81
VPS28-214ENST00000531032 OLIG3Q7RTU3 272 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.02□□□□□ -0.81
VPS28-214ENST00000531032 C16orf62Q7Z3J2 963 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 MTDHQ86UE4 582 aaKnown RBP10.02□□□□□ -0.81
VPS28-214ENST00000531032 ZNF100Q8IYN0 542 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 ZNF433Q8N7K0 673 aaPredicted RBP10.02□□□□□ -0.81
VPS28-214ENST00000531032 OR8J2Q8NGG1 315 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 SPATA3Q8NHX4 192 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 ZNF775Q96BV0 537 aaPredicted RBP10.02□□□□□ -0.81
VPS28-214ENST00000531032 CCDC106Q9BWC9 280 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 OR51I1Q9H343 314 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 ALG2Q9H553 416 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 BARX1Q9HBU1 254 aaPredicted RBP10.02□□□□□ -0.81
VPS28-214ENST00000531032 KCNK9Q9NPC2 374 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 POLE3Q9NRF9 147 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 EXD2Q9NVH0 621 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 FAIMQ9NVQ4 179 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 RAB21Q9UL25 225 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 SLC35A3Q9Y2D2 325 aa10.02□□□□□ -0.81
VPS28-214ENST00000531032 ZNF716A6NP11 495 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 ABCD4O14678 606 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 ANKRD28O15084 1053 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 TM9SF1O15321 606 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 DNPH1O43598 174 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 TLX2O43763 284 aaPredicted RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 CD5LO43866 347 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 ADAM11O75078 769 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 NDUFS7O75251 213 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 BCAS1O75363 584 aaPredicted RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 PMS2P2O95744 297 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 AGR2O95994 175 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 SERPINE1P05121 402 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 APOBEC1P41238 236 aaKnown RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 FUT5Q11128 374 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 CHI3L2Q15782 390 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 PDCD2Q16342 344 aaPredicted RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 NRF1Q16656 503 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 ATAD3BQ5T9A4 648 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 TYW3Q6IPR3 259 aaKnown RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 ANKRD42Q8N9B4 389 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 OR4A15Q8NGL6 344 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 ZBTB9Q96C00 473 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 RADILQ96JH8 1075 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 HS6ST2Q96MM7 605 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 PAIP2Q9BPZ3 127 aaKnown RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 SAP130Q9H0E3 1048 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms