RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PYHIN1Q6K0P9 492 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 IDO2Q6ZQW0 420 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 KRT74Q7RTS7 529 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 RD3Q7Z3Z2 195 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 SLC44A3Q8N4M1 653 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 OR4C6Q8NH72 309 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 GHSRQ92847 366 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 MARVELD3Q96A59 401 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 PILRAQ9UKJ1 303 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 GXYLT2A0PJZ3 443 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 URADA6NGE7 173 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 BRINP1O60477 761 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 CT62P0C5K7 136 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 NT5EP21589 574 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 PYCR1P32322 319 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 FCN2Q15485 313 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 PRICKLE4Q2TBC4 344 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 PRRT3Q5FWE3 981 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 ENPP7Q6UWV6 458 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 YAF2Q8IY57 180 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.78■□□□□ 0.44
VPS28-213ENST00000530983 NUDT15Q9NV35 164 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 HAO2Q9NYQ3 351 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 CA5BQ9Y2D0 317 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 H0Y8X5 98 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 K7EQS6 105 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 ZNF3P17036 446 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 FHL1Q13642 323 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 TOR2AQ5JU69 321 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 ZNF613Q6PF04 617 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 FIGLAQ6QHK4 219 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 NUDT18Q6ZVK8 323 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 ABHD13Q7L211 337 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 C9orf62Q8N4C0 152 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 OR5T3Q8NGG3 340 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 SCMH1Q96GD3 660 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 HYLS1Q96M11 299 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 KXD1Q9BQD3 176 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 TWSG1Q9GZX9 223 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 IL21RQ9HBE5 538 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 LYRM4Q9HD34 91 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 B3GNT2Q9NY97 397 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 FLRT3Q9NZU0 649 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 ST6GALNAC2Q9UJ37 374 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 USP34Q70CQ2 3546 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 FANCMQ8IYD8 2048 aa17.77■□□□□ 0.44
VPS28-213ENST00000530983 ARHGEF17Q96PE2 2063 aaPredicted RBP17.77■□□□□ 0.44
VPS28-213ENST00000530983 TRAV6A0A075B6T7 132 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 A0A0B4J2E0 115 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 A0A1B0GX12 115 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 C7orf66A4D0T2 115 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 FABP7O15540 132 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 ADAM11O75078 769 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 NGFRP08138 427 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 RAB3BP20337 219 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 GABRA3P34903 492 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 NRG3P56975 720 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 MGAT2Q10469 447 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 SDE2Q6IQ49 451 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 GHDCQ8N2G8 530 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 TEX19Q8NA77 164 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 CNOT9Q92600 299 aaKnown RBP17.77■□□□□ 0.43
VPS28-213ENST00000530983 TNFRSF13CQ96RJ3 184 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 TTTY10Q9BZA0 68 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 GHITMQ9H3K2 345 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 PCOLCE2Q9UKZ9 415 aa17.77■□□□□ 0.43
VPS28-213ENST00000530983 A0A1W2PRG6 482 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 PEPDP12955 493 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 POLR2CP19387 275 aaPredicted RBP17.76■□□□□ 0.43
VPS28-213ENST00000530983 ZNF10P21506 573 aaPredicted RBP17.76■□□□□ 0.43
VPS28-213ENST00000530983 DRD5P21918 477 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 ACTR1BP42025 376 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 ACTR1AP61163 376 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 CAMKVQ8NCB2 501 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 OR10G6Q8NH81 332 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 SLC2A12Q8TD20 617 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 TSACCQ96A04 125 aaPredicted RBP17.76■□□□□ 0.43
VPS28-213ENST00000530983 ZNF559Q9BR84 538 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 TMEM27Q9HBJ8 222 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 MCCC2Q9HCC0 563 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 C14orf105Q9NVL8 296 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 NPFFR2Q9Y5X5 522 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 CYR61O00622 381 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 HYAL3O43820 417 aaPredicted RBP17.76■□□□□ 0.43
VPS28-213ENST00000530983 HCCSP53701 268 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 KIAA1024LP59773 190 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 ACTC1P68032 377 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 ACTA1P68133 377 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 POU6F2P78424 691 aaPredicted RBP17.76■□□□□ 0.43
VPS28-213ENST00000530983 GPM6BQ13491 265 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 HACD4Q5VWC8 232 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 ZCCHC12Q6PEW1 402 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 LYPD4Q6UWN0 246 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 SYT9Q86SS6 491 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 MS4A15Q8N5U1 240 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 OR4D9Q8NGE8 314 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 YIPF5Q969M3 257 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 PTCHD1Q96NR3 888 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 ZNF426Q9BUY5 554 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 TMEM168Q9H0V1 697 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms