RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 CADM1Q9BY67 442 aaKnown RBP12.64□□□□□ -0.39
USF1-209ENST00000529476 TMEM185BQ9H7F4 350 aa12.64□□□□□ -0.39
USF1-209ENST00000529476 GORASP2Q9H8Y8 452 aa12.64□□□□□ -0.39
USF1-209ENST00000529476 CTPS2Q9NRF8 586 aa12.64□□□□□ -0.39
USF1-209ENST00000529476 PLEKHB1Q9UF11 243 aaPredicted RBP12.64□□□□□ -0.39
USF1-209ENST00000529476 SH3GLB1Q9Y371 365 aa12.64□□□□□ -0.39
USF1-209ENST00000529476 CACNA1DQ01668 2161 aa12.64□□□□□ -0.39
USF1-209ENST00000529476 SPTBN1Q01082 2364 aaKnown RBP12.64□□□□□ -0.39
USF1-209ENST00000529476 ESPL1Q14674 2120 aa12.64□□□□□ -0.39
USF1-209ENST00000529476 LINC01387J3KSC0 135 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 PRRG2O14669 202 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 BCKDKO14874 412 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 GSC2O15499 205 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 PEPDP12955 493 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 ZNF708P17019 499 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 ATP6V1B2P21281 511 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 ADH6P28332 368 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 TACR3P29371 465 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 SLC1A3P43003 542 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 OR1E2P47887 323 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 RASSF2P50749 326 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 CLDN18P56856 261 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 MS4A2Q01362 244 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 SRYQ05066 204 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 EMC4Q5J8M3 183 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 WLSQ5T9L3 541 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 WBP2NLQ6ICG8 309 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 GRINAQ7Z429 371 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 RANBP3LQ86VV4 465 aaPredicted RBP12.63□□□□□ -0.39
USF1-209ENST00000529476 UBQLNLQ8IYU4 475 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 ATP6V1C2Q8NEY4 427 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 OR52E4Q8NGH9 312 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 PRR7Q8TB68 274 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 LZICQ8WZA0 190 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 HSH2DQ96JZ2 352 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 NSMCE2Q96MF7 247 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 MCHR1Q99705 422 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 ZNF559Q9BR84 538 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 PRDM14Q9GZV8 571 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 LRMDAQ9H2I8 198 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 EVA1AQ9H8M9 152 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 DCAF13Q9NV06 445 aaKnown RBP12.63□□□□□ -0.39
USF1-209ENST00000529476 TESQ9UGI8 421 aaKnown RBP12.63□□□□□ -0.39
USF1-209ENST00000529476 SH3BGRL2Q9UJC5 107 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 TINAGQ9UJW2 476 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 RPS6KA6Q9UK32 745 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 CAMK2AQ9UQM7 478 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 SLC9A8Q9Y2E8 581 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 AP4B1Q9Y6B7 739 aa12.63□□□□□ -0.39
USF1-209ENST00000529476 POLEQ07864 2286 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 TMED7-TICAM2A0A0A6YYA0 188 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 H0YC42 278 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 SEC14L5O43304 696 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 CPN1P15169 458 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 CCNA2P20248 432 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ELK4P28324 431 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 SHC1P29353 583 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 APOBEC1P41238 236 aaKnown RBP12.62□□□□□ -0.39
USF1-209ENST00000529476 POLR2HP52434 150 aaKnown RBP12.62□□□□□ -0.39
USF1-209ENST00000529476 SUCLG1P53597 346 aaKnown RBP12.62□□□□□ -0.39
USF1-209ENST00000529476 TPD52P55327 224 aaPredicted RBP12.62□□□□□ -0.39
USF1-209ENST00000529476 CLDN20P56880 219 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 RAC1P63000 192 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 TRIM25Q14258 630 aaKnown RBP12.62□□□□□ -0.39
USF1-209ENST00000529476 OR1Q1Q15612 314 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 BCL2A1Q16548 175 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 C1QL3Q5VWW1 255 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ZNF585AQ6P3V2 769 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 PGM2L1Q6PCE3 622 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 CYP2R1Q6VVX0 501 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 C3P1Q6ZMU1 363 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 FKBP9P1Q75LS8 142 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 GGNQ86UU5 652 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ADGRG3Q86Y34 549 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 DOLPP1Q86YN1 238 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ULK2Q8IYT8 1036 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 LILRA2Q8N149 483 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 FAM86B1Q8N7N1 296 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 MCUR1Q96AQ8 359 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 C3orf49Q96BT1 292 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 TRIM2Q9C040 744 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ADAM19Q9H013 955 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ALKBH4Q9NXW9 302 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 ACTR3BQ9P1U1 418 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 OSGIN1Q9UJX0 560 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 TMED7Q9Y3B3 224 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 V9GYQ6 96 aa12.62□□□□□ -0.39
USF1-209ENST00000529476 TRGV8A0A0C4DH27 118 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 A0A1B0GWA3 101 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 CPSF4LA6NMK7 179 aaKnown RBP12.61□□□□□ -0.39
USF1-209ENST00000529476 H0Y3Z8 333 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 PRKD3O94806 890 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 STSP08842 583 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 SFTPDP35247 375 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 HTR3AP46098 478 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 CLDN15P56746 228 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 GABPB1Q06547 395 aaPredicted RBP12.61□□□□□ -0.39
USF1-209ENST00000529476 SELENBP1Q13228 472 aa12.61□□□□□ -0.39
USF1-209ENST00000529476 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.61□□□□□ -0.39
USF1-209ENST00000529476 IFI44LQ53G44 452 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms