RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IQCCQ4KMZ1 466 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 MRPL2Q5T653 305 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 ZNF836Q6ZNA1 936 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 VTCN1Q7Z7D3 282 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 GALNT10Q86SR1 603 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 MARCH3Q86UD3 253 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 ZNF227Q86WZ6 799 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 CYP4Z2PQ8N1L4 340 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 BEST3Q8N1M1 668 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 LSMEM1Q8N8F7 131 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 FAM71CQ8NEG0 241 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 TOR1AIP2Q8NFQ8 470 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 OR10G3Q8NGC4 313 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 OR10Q1Q8NGQ4 319 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 PHOSPHO1Q8TCT1 267 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 GEMIN6Q8WXD5 167 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 ARSGQ96EG1 525 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 SLC47A1Q96FL8 570 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 RSRC1Q96IZ7 334 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 ARHGDIGQ99819 225 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 ZNF559Q9BR84 538 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 BDH2Q9BUT1 245 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 AMBRA1Q9C0C7 1298 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 PROK2Q9HC23 129 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 SACM1LQ9NTJ5 587 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 RLIMQ9NVW2 624 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 TUBD1Q9UJT1 453 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 CNOT11Q9UKZ1 510 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 AURKCQ9UQB9 309 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 MRPS18CQ9Y3D5 142 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 ENPP4Q9Y6X5 453 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 TENM4Q6N022 2769 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 NPIPA5A0A0B4J1W7 369 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CENPVL1A0A0U1RR11 272 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 PRAMEF25A6NGN4 478 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CLDN24A6NM45 220 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 NPIPA7E9PJI5 369 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 MKRN2OSH3BPM6 223 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 KLRC4-KLRK1H3BQV0 150 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 AP3D1O14617 1153 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ADAM10O14672 748 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CLOCKO15516 846 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CBR3O75828 277 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 OPN1SWP03999 348 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 P04436 131 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 IFNW1P05000 195 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 FABP3P05413 133 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 SP1P08047 785 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 LINGO3P0C6S8 592 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 NPIPA8P0DM63 369 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 UBL4AP11441 157 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 UQCRBP14927 111 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 PGCP20142 388 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 FKBP2P26885 142 aaKnown RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 PTGDSP41222 190 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 OR1E2P47887 323 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 MAP2K6P52564 334 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ZNF136P52737 540 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 GLYR1Q49A26 553 aaPredicted RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 SPINK14Q6IE38 97 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 SLC25A25Q6KCM7 469 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 LINC00696Q6ZRV3 163 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 MDGA2Q7Z553 956 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 TSEN54Q7Z6J9 526 aaKnown RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 RANBP3LQ86VV4 465 aaPredicted RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 CYP4Z1Q86W10 505 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CARM1Q86X55 608 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ZDHHC21Q8IVQ6 265 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ZADH2Q8N4Q0 377 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 FAM86B1Q8N7N1 296 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 PSD4Q8NDX1 1056 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 OR6T1Q8NGN1 323 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 OR5M3Q8NGP4 307 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 OR5W2Q8NH69 310 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 PYDC1Q8WXC3 89 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 TM9SF4Q92544 642 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CNOT9Q92600 299 aaKnown RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 PPP1R14AQ96A00 147 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 DTNBP1Q96EV8 351 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 TMEM41AQ96HV5 264 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ZNF300Q96RE9 604 aaPredicted RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 RTN4RQ9BZR6 473 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 TRIM2Q9C040 744 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 METTL7AQ9H8H3 244 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 TMEM27Q9HBJ8 222 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 FLRT3Q9NZU0 649 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 NDUFAF4Q9P032 175 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 C6orf203Q9P0P8 240 aaPredicted RBP6.73□□□□□ -1.33
CD44-228ENST00000528455 DNAJB9Q9UBS3 223 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ACAD8Q9UKU7 415 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 ICAM5Q9UMF0 924 aa6.73□□□□□ -1.33
CD44-228ENST00000528455 CNTRLQ7Z7A1 2325 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 BSNQ9UPA5 3926 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 HTR3EA5X5Y0 456 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 H3BNX3 289 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TBX1O43435 398 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 HCRTR2O43614 444 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TPST2O60704 377 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TRIM3O75382 744 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 PRSS23O95084 383 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms