RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PDGFRLQ15198 375 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 GXYLT1Q4G148 440 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 GPALPP1Q8IXQ4 340 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 TOR1AIP2Q8NFQ8 470 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 OR5T3Q8NGG3 340 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 ERMAPQ96PL5 475 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 OR14A2Q96R54 314 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 RAB11FIP5Q9BXF6 653 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 RANBP3Q9H6Z4 567 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 CA5BQ9Y2D0 317 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 MRPS2Q9Y399 296 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 SPEF1Q9Y4P9 236 aa8.56□□□□□ -1.04
LIMCH1-215ENST00000512632 ARID1BQ8NFD5 2236 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 RANBP2P49792 3224 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 TRABD2BA6NFA1 517 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 RAF1P04049 648 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 CLDN12P56749 244 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 LGALSLQ3ZCW2 172 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 TPRA1Q86W33 373 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 FAM98AQ8NCA5 519 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 LYARQ9NX58 379 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 KCMF1Q9P0J7 381 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 NUBP2Q9Y5Y2 271 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3EA0A087X179 549 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GPR171O14626 319 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 FLRT2O43155 660 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GMDSO60547 372 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 CTSVO60911 334 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 HNRNPA1P09651 372 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 NID1P14543 1247 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 TNFRSF17Q02223 184 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 AMZ1Q400G9 498 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 EIPR1Q53HC9 387 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 HES5Q5TA89 166 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF619Q8N2I2 560 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 OR2T35Q8NGX2 323 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 ANGPTL6Q8NI99 470 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 FGF13Q92913 245 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 SMARCD2Q92925 531 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GPR137Q96N19 417 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF559Q9BR84 538 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GLTPQ9NZD2 209 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 OR6C2Q9NZP2 312 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 ELF5Q9UKW6 265 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 FAM171A2A8MVW0 826 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 TFP02787 698 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC35G6P0C7Q6 338 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 EPXP11678 715 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GDI2P50395 445 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 SEC13P55735 322 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 RPL6Q02878 288 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 CAMK2DQ13557 499 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 CEBPEQ15744 281 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 DMKNQ6E0U4 476 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 PAQR7Q86WK9 346 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 OR2L13Q8N349 312 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF527Q8NB42 609 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 SNX33Q8WV41 574 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GAL3ST3Q96A11 431 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 PELI1Q96FA3 418 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 GPR174Q9BXC1 333 aa8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 THAP10Q9P2Z0 257 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 NUP210Q8TEM1 1887 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3DA0A087WVF3 549 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3IA0A087WXS9 549 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 ANKRD61A6NGH8 418 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 IDSB3KWA1 339 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3LB9A6J9 549 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 ADAM11O75078 769 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 UBL3O95164 117 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 CFDP00746 253 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 PDGFAP04085 211 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 DBIP07108 87 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3HP0C7X1 549 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 CPMP14384 443 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 PVRP15151 417 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF3P17036 446 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 GRPRP30550 384 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TLX1P31314 330 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 SHC2P98077 582 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 CRYZQ08257 329 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 GSG1Q2KHT4 349 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 C2orf27AQ580R0 203 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 GARNL3Q5VVW2 1013 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3CQ6IPX1 549 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 LINGO2Q7L985 606 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3Q8IZP1 549 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TMEM52Q8NDY8 209 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 RPLP0P6Q8NHW5 317 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 LGALS14Q8TCE9 139 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 ASB16Q96NS5 453 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 OR2M2Q96R28 347 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TIMM29Q9BSF4 260 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 JAM3Q9BX67 310 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC25A18Q9H1K4 315 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 OR10A4Q9H209 315 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 HEXA-AS1Q9H8Q6 139 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 TMEM27Q9HBJ8 222 aa8.54□□□□□ -1.04
LIMCH1-215ENST00000512632 EMC7Q9NPA0 242 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms