RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 RTL6Q6ICC9 239 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 LRRC8BQ6P9F7 803 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 FAM228AQ86W67 206 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 STHQ8IWL8 128 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 FBXO16Q8IX29 292 aaPredicted RBP3.95□□□□□ -1.78
SF3B1-212ENST00000496458 LINC00518Q8N0U6 118 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 OR4A16Q8NH70 328 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 RAB3IL1Q8TBN0 382 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 SLC22A8Q8TCC7 542 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 MRPL53Q96EL3 112 aaKnown RBP3.95□□□□□ -1.78
SF3B1-212ENST00000496458 NRBF2Q96F24 287 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 SIKE1Q9BRV8 207 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 SLC39A3Q9BRY0 314 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 FUNDC2Q9BWH2 189 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 FAM192AQ9GZU8 254 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 HAUS4Q9H6D7 363 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 YAE1D1Q9NRH1 226 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 KIAA1257Q9ULG3 409 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 AFF2P51816 1311 aa3.95□□□□□ -1.78
SF3B1-212ENST00000496458 OR52A4PA6NMU1 304 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 A8MUI8 341 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 WRBO00258 174 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 RTL8CO15255 209 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 ADAM12O43184 909 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 LRP3O75074 770 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 OR4F21O95013 312 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 GJB5O95377 273 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 P0C879 139 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 RRASP10301 218 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 RALBP11234 206 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 LAMP1P11279 417 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 PAICSP22234 425 aaKnown RBP3.94□□□□□ -1.78
SF3B1-212ENST00000496458 PRKAR2BP31323 418 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 TRIM23P36406 574 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 MAGEA1P43355 309 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 GEMP55040 296 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 CDKL1Q00532 357 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 NCBP1Q09161 790 aaKnown RBP3.94□□□□□ -1.78
SF3B1-212ENST00000496458 IL18Q14116 193 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 KIAA0040Q15053 153 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 ADPRMQ3LIE5 342 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 HHATQ5VTY9 493 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 IL23RQ5VWK5 629 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 GPR142Q7Z601 462 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 SPATA24Q86W54 205 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 MYOCDQ8IZQ8 938 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 GCNT2Q8N0V5 402 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 LILRB4Q8NHJ6 448 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 DNAJA4Q8WW22 397 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-212ENST00000496458 NCLNQ969V3 563 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 C4orf36Q96KX1 117 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 OR5M11Q96RB7 305 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 C19orf43Q9BQ61 176 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 HPS4Q9NQG7 708 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 DDX28Q9NUL7 540 aaKnown RBP3.94□□□□□ -1.78
SF3B1-212ENST00000496458 VPS54Q9P1Q0 977 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 CRLS1Q9UJA2 301 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 MRPS33Q9Y291 106 aaKnown RBP3.94□□□□□ -1.78
SF3B1-212ENST00000496458 STK38LQ9Y2H1 464 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 AHDC1Q5TGY3 1603 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-212ENST00000496458 USP32Q8NFA0 1604 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 ANKARQ7Z5J8 1434 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 MAP3K19Q56UN5 1328 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 PHLPP2Q6ZVD8 1323 aa3.94□□□□□ -1.78
SF3B1-212ENST00000496458 OBSCNQ5VST9 7968 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 PNPLA6Q8IY17 1366 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 USP47Q96K76 1375 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 NHSL1Q5SYE7 1610 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 A0A1B0GTQ1 180 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 TMEM89A2RUT3 159 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 SPECC1L-ADORA2AF8WAN1 911 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 ZNF264O43296 627 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 FLOT1O75955 427 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 NEBLO76041 1014 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 DUSP14O95147 198 aaKnown RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 ZCCHC18P0CG32 403 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 NCF2P19878 526 aaPredicted RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 DPP4P27487 766 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 KRTAP10-8P60410 259 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 CNTN2Q02246 1040 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 KLF5Q13887 457 aaPredicted RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 SSX2Q16385 188 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 ISXQ2M1V0 245 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 PAN3Q58A45 887 aaKnown RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 TTC19Q6DKK2 380 aaPredicted RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 CDR2LQ86X02 465 aaPredicted RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 NECAB1Q8N987 351 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 SLC2A14Q8TDB8 520 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 STARD8Q92502 1023 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 EMG1Q92979 244 aaKnown RBP3.93□□□□□ -1.78
SF3B1-212ENST00000496458 LRRC39Q96DD0 335 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 ATP6V1G3Q96LB4 118 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 CASD1Q96PB1 797 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 TESK2Q96S53 571 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 GANQ9H2C0 597 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 ASB8Q9H765 288 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 APMAPQ9HDC9 416 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 SPATA7Q9P0W8 599 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 TULP4Q9NRJ4 1543 aa3.93□□□□□ -1.78
SF3B1-212ENST00000496458 PPIP5K1Q6PFW1 1433 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms