RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	PEPD	P12955	493 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	CXCR1	P25024	350 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	PSMA4	P25789	261 aa	Known RBP	13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	IFNA8	P32881	189 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	STAR	P49675	285 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	TAS2R41	P59536	307 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	CRYZ	Q08257	329 aa	Known RBP	13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	WLS	Q5T9L3	541 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	C3orf33	Q6P1S2	294 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	ULK3	Q6PHR2	472 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	SPATA24	Q86W54	205 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	ATCAY	Q86WG3	371 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	UBQLNL	Q8IYU4	475 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	LILRA2	Q8N149	483 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	DNAJA4	Q8WW22	397 aa	Predicted RBP	13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	MIB2	Q96AX9	1013 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	C3orf49	Q96BT1	292 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	SLC47A1	Q96FL8	570 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	SEPHS2	Q99611	448 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	TIMP4	Q99727	224 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	OSGIN1	Q9UJX0	560 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	CAMK2A	Q9UQM7	478 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	AP4B1	Q9Y6B7	739 aa		13.15	□□□□□ -0.3
BRCA1-223	ENST00000494123	SPEN	Q96T58	3664 aa	Known RBP	13.15	□□□□□ -0.31
BRCA1-223	ENST00000494123	TMED7-TICAM2	A0A0A6YYA0	188 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123		A0A1B0GWA3	101 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ERICH4	A6NGS2	130 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ELOA3D	A6NLF2	546 aa	Predicted RBP	13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	AQP12B	A6NM10	295 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	GJE1	A6NN92	205 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	SEC14L5	O43304	696 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	CCNA2	P20248	432 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	IL11	P20809	199 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	DLX5	P56178	289 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	RAC1	P63000	192 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	SRY	Q05066	204 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ELOA3B	Q3SY89	546 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ALG10B	Q5I7T1	473 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	DCST1	Q5T197	706 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF613	Q6PF04	617 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	CYP4Z1	Q86W10	505 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	AQP12A	Q8IXF9	295 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	MEIOB	Q8N635	442 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ELOA3	Q8NG57	546 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ADAMTS16	Q8TE57	1224 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	AMBRA1	Q9C0C7	1298 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	POLR2J2	Q9GZM3	115 aa	Known RBP	13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	ADAM19	Q9H013	955 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	POLR2J3	Q9H1A7	115 aa	Known RBP	13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	CHRNA9	Q9UGM1	479 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	TMED7	Q9Y3B3	224 aa		13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123	FAM32A	Q9Y421	112 aa	Known RBP	13.14	□□□□□ -0.31
BRCA1-223	ENST00000494123		A0A0B4J2E0	115 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123		A0A1B0GX12	115 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	TCRBV5S2	A0A599	114 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	TRAPPC13	A5PLN9	417 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PRRG2	O14669	202 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SLC19A2	O60779	497 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	WISP1	O95388	367 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	OPN1LW	P04000	364 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PNMT	P11086	282 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF708	P17019	499 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ITGA2	P17301	1181 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SFTPD	P35247	375 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	YAP1	P46937	504 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	LHX2	P50458	406 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	IGFBP7	Q16270	282 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	FAM98B	Q52LJ0	330 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	FGD2	Q7Z6J4	655 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PM20D2	Q8IYS1	436 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	GALNT11	Q8NCW6	608 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	OR5M9	Q8NGP3	310 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SLC25A43	Q8WUT9	341 aa	Predicted RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ALKBH4	Q9NXW9	302 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	MED12	Q93074	2177 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123		H0Y3Z8	333 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	hCG_2039718	K7EN88	272 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	EIF1AY	O14602	144 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	FABP3	P05413	133 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	TFPI	P10646	304 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	FKBP2	P26885	142 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SLC7A1	P30825	629 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	CASP6	P55212	293 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	CDH12	P55289	794 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	CHRNB3	Q05901	458 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PIN1	Q13526	163 aa	Predicted RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	BCL2A1	Q16548	175 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	C3AR1	Q16581	482 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SWT1	Q5T5J6	900 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	CHMP1B	Q7LBR1	199 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF605	Q86T29	641 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ATG4D	Q86TL0	474 aa	Predicted RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	CD163	Q86VB7	1156 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ADGRG3	Q86Y34	549 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	CHERP	Q8IWX8	916 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	FAM57A	Q8TBR7	257 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PHF10	Q8WUB8	498 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	UTP4	Q969X6	686 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	RELT	Q969Z4	430 aa		13.13	□□□□□ -0.31

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