RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 A0A1W2PNR3 127 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 EEF1E1-BLOC1S5C9J1V9 151 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 FXYD1O00168 92 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 ETV2O00321 342 aaPredicted RBP13.24□□□□□ -0.29
USP4-212ENST00000486549 ADAMDEC1O15204 470 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 EEF1E1O43324 174 aaKnown RBP13.24□□□□□ -0.29
USP4-212ENST00000486549 FRS3O43559 492 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 SNX3O60493 162 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 AQP8O94778 261 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 COX4I1P13073 169 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 ETS2P15036 469 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 OPRM1P35372 400 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 SIRPAP78324 504 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 TFF3Q07654 80 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 GRINAQ7Z429 371 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 KRT73Q86Y46 540 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 PTOV1Q86YD1 416 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 TREML1Q86YW5 311 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 ZZZ3Q8IYH5 903 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 ZNF440Q8IYI8 595 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CADM2Q8N3J6 435 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CNEP1R1Q8N9A8 125 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 C11orf65Q8NCR3 313 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 RP9Q8TA86 221 aaKnown RBP13.24□□□□□ -0.29
USP4-212ENST00000486549 OSTF1Q92882 214 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 DNAJA3Q96EY1 480 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 ZFP3Q96NJ6 502 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 OR5B2Q96R09 309 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 SPOCK3Q9BQ16 436 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 SPATA5L1Q9BVQ7 753 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CCDC106Q9BWC9 280 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 SFXN3Q9BWM7 321 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 KAT8Q9H7Z6 458 aaKnown RBP13.24□□□□□ -0.29
USP4-212ENST00000486549 COQ10BQ9H8M1 238 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 SLC24A3Q9HC58 644 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 NPDC1Q9NQX5 325 aaPredicted RBP13.24□□□□□ -0.29
USP4-212ENST00000486549 GID8Q9NWU2 228 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CHST2Q9Y4C5 530 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CRYBG3Q68DQ2 2970 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CELSR2Q9HCU4 2923 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 CACNA1DQ01668 2161 aa13.24□□□□□ -0.29
USP4-212ENST00000486549 NBPF19A0A087WUL8 3843 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 A0A1W2PNV4 684 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 AIM2O14862 343 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 TFPIP10646 304 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 FCGR2AP12318 317 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 PRG2P13727 222 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 SSTR2P30874 369 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 APOBEC1P41238 236 aaKnown RBP13.23□□□□□ -0.29
USP4-212ENST00000486549 ASCL1P50553 236 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 CARD18P57730 90 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 RBBP4Q09028 425 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 OR2A2Q6IF42 318 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 MEX3BQ6ZN04 569 aaKnown RBP13.23□□□□□ -0.29
USP4-212ENST00000486549 ZNF550Q7Z398 422 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 SERPINA11Q86U17 422 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 ROBO4Q8WZ75 1007 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 ZNF607Q96SK3 696 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 SH3GL1Q99961 368 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 SRXN1Q9BYN0 137 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 PAQR5Q9NXK6 330 aaPredicted RBP13.23□□□□□ -0.29
USP4-212ENST00000486549 CHRNA9Q9UGM1 479 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 CLEC4AQ9UMR7 237 aa13.23□□□□□ -0.29
USP4-212ENST00000486549 SPIN1Q9Y657 262 aaPredicted RBP13.23□□□□□ -0.29
USP4-212ENST00000486549 ITPR2Q14571 2701 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 PKDREJQ9NTG1 2253 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 TMED7-TICAM2A0A0A6YYA0 188 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 IL18BPO95998 194 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 PLGP00747 810 aaPredicted RBP13.22□□□□□ -0.29
USP4-212ENST00000486549 NPPAP01160 153 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 OPN1SWP03999 348 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 TACR3P29371 465 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 PRKAR1BP31321 381 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 UQCRC1P31930 480 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 ACAA2P42765 397 aaKnown RBP13.22□□□□□ -0.29
USP4-212ENST00000486549 SLC1A3P43003 542 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 POLR2HP52434 150 aaKnown RBP13.22□□□□□ -0.29
USP4-212ENST00000486549 COPZ1P61923 177 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 HOXC5Q00444 222 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 ZSWIM7Q19AV6 140 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 SYT14P1Q58G82 188 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 VWA1Q6PCB0 445 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 NET1Q7Z628 596 aaPredicted RBP13.22□□□□□ -0.29
USP4-212ENST00000486549 LUZP2Q86TE4 346 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 ARMC8Q8IUR7 673 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 OR8J3Q8NGG0 315 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 SLC25A43Q8WUT9 341 aaPredicted RBP13.22□□□□□ -0.29
USP4-212ENST00000486549 REXO5Q96IC2 774 aaKnown RBP13.22□□□□□ -0.29
USP4-212ENST00000486549 ECSITQ9BQ95 431 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 OR11A1Q9GZK7 315 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 MYLK2Q9H1R3 596 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 RNF122Q9H9V4 155 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 TIGARQ9NQ88 270 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 OSGIN1Q9UJX0 560 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 TMED7Q9Y3B3 224 aa13.22□□□□□ -0.29
USP4-212ENST00000486549 CREBBPQ92793 2442 aa13.21□□□□□ -0.29
USP4-212ENST00000486549 IGHV3-15A0A0B4J1V0 119 aa13.21□□□□□ -0.29
USP4-212ENST00000486549 TMEM72A0PK05 275 aa13.21□□□□□ -0.29
USP4-212ENST00000486549 PRORSD1PA6NEY8 169 aa13.21□□□□□ -0.29
USP4-212ENST00000486549 FAAHO00519 579 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms