RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 GMFGO60234 142 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 NME2P1O60361 137 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 CDC40O60508 579 aaKnown RBP eCLIP7.48□□□□□ -1.21
USP4-210ENST00000483212 NPIPB7O75200 414 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 SLC25A12O75746 678 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 ADAP00813 363 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 P04436 131 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 TP53P04637 393 aaPredicted RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 SP1P08047 785 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 C1QTNF9P0C862 333 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 ANXA8P13928 327 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 UQCRBP14927 111 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 CNR1P21554 472 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 NME2P22392 152 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 ITPKBP27987 946 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 TACR3P29371 465 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 IFNA8P32881 189 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 CASRP41180 1078 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 RBM34P42696 430 aaKnown RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 GSSP48637 474 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 DNASE1L1P49184 302 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 ARHGDIAP52565 204 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 CTBP2P56545 445 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 COPZ1P61923 177 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 OC90Q02509 493 aaPredicted RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 EGR4Q05215 589 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 FOXF1Q12946 379 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 KCNAB2Q13303 367 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 TMEM44Q2T9K0 475 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 PLPPR5Q32ZL2 321 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 CD300LDQ6UXZ3 194 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 GRINAQ7Z429 371 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 HEATR5AQ86XA9 2040 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 NRMQ8IXM6 262 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 RNF113BQ8IZP6 322 aaKnown RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 LINC00471Q8N535 108 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 AQP11Q8NBQ7 271 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 PFN4Q8NHR9 129 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 SNRNP27Q8WVK2 155 aaKnown RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 ST8SIA1Q92185 356 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 SDCCAG3Q96C92 435 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 C1GALT1C1Q96EU7 318 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 RDH12Q96NR8 316 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 ZNF184Q99676 751 aaPredicted RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 TACO1Q9BSH4 297 aaKnown RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 TMEM43Q9BTV4 400 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 GABARAPL3Q9BY60 117 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 UBQLN3Q9H347 655 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 TIMMDC1Q9NPL8 285 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 C20orf141Q9NUB4 165 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 SMPD3Q9NY59 655 aaPredicted RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 TUBA8Q9NY65 449 aaPredicted RBP7.48□□□□□ -1.21
USP4-210ENST00000483212 REV1Q9UBZ9 1251 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 TMCC3Q9ULS5 477 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 MGAT4BQ9UQ53 548 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 RAXQ9Y2V3 346 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 LRRC42Q9Y546 428 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 CSAG2Q9Y5P2 127 aa7.48□□□□□ -1.21
USP4-210ENST00000483212 IGF2RP11717 2491 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 NINQ8N4C6 2090 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 RRP8O43159 456 aaKnown RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 OR10H3O60404 316 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 ZIC3O60481 467 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 GLSO94925 669 aaPredicted RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 SNAP29O95721 258 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 IGF2P01344 180 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 PDGFAP04085 211 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 PNMTP11086 282 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 GP1BBP13224 206 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 MAKP20794 623 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 PTNP21246 168 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 IGFBP5P24593 272 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 FPR3P25089 353 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 POLR2IP36954 125 aaKnown RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 CD97P48960 835 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 TNFSF10P50591 281 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 POLR2HP52434 150 aaKnown RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 GPR85P60893 370 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 ADARB1P78563 741 aaKnown RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 FOXK1P85037 733 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 PRKCDQ05655 676 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 FOXD4Q12950 439 aaPredicted RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 FHL1Q13642 323 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 SLC25A25Q6KCM7 469 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 KLHL17Q6TDP4 642 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 ZNF730Q6ZMV8 503 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 TMPRSS11FQ6ZWK6 438 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 MEX3DQ86XN8 651 aaKnown RBP7.47□□□□□ -1.21
USP4-210ENST00000483212 ADGRG3Q86Y34 549 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 SULF2Q8IWU5 870 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 PARP8Q8N3A8 854 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 ATG16L2Q8NAA4 619 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 OR2M7Q8NG81 312 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 OR4K17Q8NGC6 315 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 ZNF563Q8TA94 476 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 DNAJC9Q8WXX5 260 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 TFAP2CQ92754 450 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 HS6ST2Q96MM7 605 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 GNRHR2Q96P88 292 aa7.47□□□□□ -1.21
USP4-210ENST00000483212 FAM173AQ9BQD7 235 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms