RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TMED7-TICAM2A0A0A6YYA0 188 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 TRGV5A0A0B4J1U4 118 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 A0A0B4J2E0 115 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 A0A1B0GX12 115 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 OR2M5A3KFT3 312 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 C7orf72A4D263 438 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 TTLL8A6PVC2 850 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 FFAR1O14842 300 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 TIPRLO75663 272 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 WISP2O76076 250 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 WISP1O95388 367 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 NTN1O95631 604 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 THY1P04216 161 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ZNF17P17021 662 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 CCNA2P20248 432 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 CXCR1P25024 350 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ADH6P28332 368 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 GCKP35557 465 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 APOBEC1P41238 236 aaKnown RBP11.07□□□□□ -0.64
SDC1-206ENST00000482879 CDH12P55289 794 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 DLX5P56178 289 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 B3GALT5-AS1P59052 145 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ST3GAL3Q11203 375 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 TMEM44Q2T9K0 475 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ALG10BQ5I7T1 473 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ZFP1Q6P2D0 407 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ADGRG3Q86Y34 549 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 LSM14AQ8ND56 463 aaKnown RBP11.07□□□□□ -0.64
SDC1-206ENST00000482879 STMN2Q93045 179 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 SNRNP40Q96DI7 357 aaKnown RBP11.07□□□□□ -0.64
SDC1-206ENST00000482879 NMNAT1Q9HAN9 279 aaPredicted RBP11.07□□□□□ -0.64
SDC1-206ENST00000482879 SERINC1Q9NRX5 453 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ARMC1Q9NVT9 282 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ACAD8Q9UKU7 415 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 SLC7A7Q9UM01 511 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 SLC6A5Q9Y345 797 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 TMED7Q9Y3B3 224 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 TESMINQ9Y4I5 508 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 LIPGQ9Y5X9 500 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 PRRC2CQ9Y520 2896 aaKnown RBP11.07□□□□□ -0.64
SDC1-206ENST00000482879 BOD1L1Q8NFC6 3051 aa11.07□□□□□ -0.64
SDC1-206ENST00000482879 ELOA3DA6NLF2 546 aaPredicted RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 H0YHG0 523 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 HNRNPRO43390 633 aaKnown RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 CHP2O43745 196 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 EFNA2O43921 213 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 HCN1O60741 890 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 PRSS23O95084 383 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 LYPD3O95274 346 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 CST1P01037 141 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 IGHG3P01860 377 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 H1F0P07305 194 aaKnown RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 THRBP10828 461 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 PNMTP11086 282 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 IL11P20809 199 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 CHMP24386 653 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 SMIM11AP58511 58 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 ELF3P78545 371 aaPredicted RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 SPIBQ01892 262 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 TRAM2Q15035 370 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 ELOA3BQ3SY89 546 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 PRR30Q53SZ7 412 aaPredicted RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 SWT1Q5T5J6 900 aaKnown RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 ZNF324BQ6AW86 544 aaPredicted RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 OR2T5Q6IEZ7 315 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 AAGABQ6PD74 315 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 TRILQ7L0X0 811 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 ATG4DQ86TL0 474 aaPredicted RBP11.06□□□□□ -0.64
SDC1-206ENST00000482879 OFCC1Q8IZS5 231 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 PIK3C3Q8NEB9 887 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 ATP6V1C2Q8NEY4 427 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 ELOA3Q8NG57 546 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 OR2T29Q8NH02 315 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 NEIL3Q8TAT5 605 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 FAR1Q8WVX9 515 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 SLC38A4Q969I6 547 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 C12orf10Q9HB07 376 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 S100A14Q9HCY8 104 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 AGPAT4Q9NRZ5 378 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 CHRNA9Q9UGM1 479 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 ZNF337Q9Y3M9 751 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 SHANK1Q9Y566 2161 aa11.06□□□□□ -0.64
SDC1-206ENST00000482879 IGSF10Q6WRI0 2623 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ZFYVE26Q68DK2 2539 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 A0A087WUJ7 227 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 TMEM72A0PK05 275 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 H3BML4 177 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 LINC01387J3KSC0 135 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 GNGT2O14610 69 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ADAMDEC1O15204 470 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 SUSD5O60279 629 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 GADD45GO95257 159 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 OPN1LWP04000 364 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 PEPDP12955 493 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 FUT4P22083 530 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 FASP25445 335 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ELK4P28324 431 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 RRM2P31350 389 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 STARP49675 285 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 GFRA1P56159 465 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms