RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 LMF2Q9BU23 707 aaKnown RBP13.3□□□□□ -0.28
CHD3-211ENST00000481999 LRRN3Q9H3W5 708 aa13.3□□□□□ -0.28
CHD3-211ENST00000481999 MEPEQ9NQ76 525 aaPredicted RBP13.3□□□□□ -0.28
CHD3-211ENST00000481999 PLEKHB1Q9UF11 243 aaPredicted RBP13.3□□□□□ -0.28
CHD3-211ENST00000481999 CSNK1G3Q9Y6M4 447 aa13.3□□□□□ -0.28
CHD3-211ENST00000481999 PCNX3Q9H6A9 2034 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 ADAMTS20P59510 1910 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 CFAP47Q6ZTR5 3102 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 A0A1W2PQL4 384 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 LYPD3O95274 346 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZGLP1P0C6A0 271 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 FPR3P25089 353 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 GABRA5P31644 462 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 RFX2P48378 723 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 HSD17B7P56937 341 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 RPS25P62851 125 aaKnown RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZNHIT3Q15649 155 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 CRTC2Q53ET0 693 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 GARNL3Q5VVW2 1013 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 QSOX2Q6ZRP7 698 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 RANBP3LQ86VV4 465 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 RAB43Q86YS6 212 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 CADM2Q8N3J6 435 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 D2HGDHQ8N465 521 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 GDPD1Q8N9F7 314 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 GATAD2BQ8WXI9 593 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 HOXB13Q92826 284 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 OSTF1Q92882 214 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 SAMD8Q96LT4 415 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 GAL3ST4Q96RP7 486 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 RAB33BQ9H082 229 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 DNAJB12Q9NXW2 375 aaKnown RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 PILRBQ9UKJ0 227 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 GSTK1Q9Y2Q3 226 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 SF3B6Q9Y3B4 125 aaKnown RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 TRAV27A0A087WT01 109 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 A0A1W2PQ09 198 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZC3H12DA2A288 527 aaKnown RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 H0YIG0 161 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 PRAMEF2O60811 474 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 OR5F1O95221 314 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 CLEC2LP0C7M8 214 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 LIMS3P0CW19 117 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 LIMS4P0CW20 117 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 SDC2P34741 201 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 STAT5AP42229 794 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 FUT7Q11130 342 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 SLC35F1Q5T1Q4 408 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZCCHC12Q6PEW1 402 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 MBOAT2Q6ZWT7 520 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 GPR135Q8IZ08 494 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 OTULINQ96BN8 352 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZNF501Q96CX3 271 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZNF486Q96H40 463 aaPredicted RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 DPYSL5Q9BPU6 564 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 RTN4RQ9BZR6 473 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 NXF5Q9H1B4 397 aaKnown RBP13.29□□□□□ -0.28
CHD3-211ENST00000481999 MIXL1Q9H2W2 232 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 RERGLQ9H628 205 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 TIGARQ9NQ88 270 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 ZNF221Q9UK13 617 aa13.29□□□□□ -0.28
CHD3-211ENST00000481999 DMXL1Q9Y485 3027 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 CUL9Q8IWT3 2517 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 TRAPPC13A5PLN9 417 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 FABP12A6NFH5 140 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 KLF4O43474 513 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 IFI30P13284 250 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 FGF9P31371 208 aaPredicted RBP13.28□□□□□ -0.28
CHD3-211ENST00000481999 ACAA2P42765 397 aaKnown RBP13.28□□□□□ -0.28
CHD3-211ENST00000481999 CDH11P55287 796 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 SKP1P63208 163 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 ASAH1Q13510 395 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 DECR1Q16698 335 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 GXYLT1Q4G148 440 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 EIPR1Q53HC9 387 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 THSD4Q6ZMP0 1018 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 C16orf47Q6ZP98 133 aaPredicted RBP13.28□□□□□ -0.28
CHD3-211ENST00000481999 MED25Q71SY5 747 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 EID2Q8N6I1 236 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 OR13C2Q8NGS9 318 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 SAP25Q8TEE9 199 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 DIRAS2Q96HU8 199 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 SLC41A2Q96JW4 573 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 NEDD4LQ96PU5 975 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 ARHGAP9Q9BRR9 750 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 KATNB1Q9BVA0 655 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 GAREM1Q9H706 876 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 NEK6Q9HC98 313 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 MED17Q9NVC6 651 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 MKL2Q9ULH7 1088 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 CBLCQ9ULV8 474 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 YARS2Q9Y2Z4 477 aaKnown RBP13.28□□□□□ -0.28
CHD3-211ENST00000481999 RBMX2Q9Y388 322 aaKnown RBP13.28□□□□□ -0.28
CHD3-211ENST00000481999 A0A1B0GWA3 101 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 TNFRSF10AO00220 468 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 OIP5O43482 229 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 TDGF1P13385 188 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 CD79BP40259 229 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 NR4A2P43354 598 aa13.28□□□□□ -0.28
CHD3-211ENST00000481999 NKX2-5P52952 324 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms