RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 UBE2TQ9NPD8 197 aaPredicted RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 ZNF629Q9UEG4 869 aaPredicted RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 ASIC3Q9UHC3 531 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 GRID1Q9ULK0 1009 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SMC3Q9UQE7 1217 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 PRKDCP78527 4128 aaKnown RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 IGLV3-12A0A075B6K2 115 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 A0A0J9YWU9 116 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 C1orf232A0A0U1RR37 186 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 hCG_1809904A0A1W2PP81 198 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 A0A1W2PPE2 198 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 A0A1W2PR64 198 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 H7C423 109 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 BTN3A3O00478 584 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 CDC40O60508 579 aaKnown RBP eCLIP3.87□□□□□ -1.79
VPS50-214ENST00000477935 SRPX2O60687 465 aaPredicted RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 GABRA1P14867 456 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 CYP11B1P15538 503 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 PFKFB1P16118 471 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 IL11P20809 199 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 CDH5P33151 784 aaPredicted RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 CD86P42081 329 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 PPP5CP53041 499 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 VSX2P58304 361 aaPredicted RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 HSPB3Q12988 150 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 DPYSQ14117 519 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 CAPRIN1Q14444 709 aaKnown RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 MESDQ14696 234 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 STK38Q15208 465 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 TAZQ16635 292 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 CCDC14Q49A88 953 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 CMPK2Q5EBM0 449 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 XKR6Q5GH73 641 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 SLC25A53Q5H9E4 307 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 SPESP1Q6UW49 350 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 COX15Q7KZN9 410 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 OTOAQ7RTW8 1153 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 AMIGO1Q86WK6 493 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 RPRMLQ8N4K4 120 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 LRRC17Q8N6Y2 441 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 C3orf56Q8N813 242 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 LSMEM1Q8N8F7 131 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 LINC00301Q8NCQ3 95 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 LINC01560Q8TB33 94 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 DTX3LQ8TDB6 740 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 FAF2Q96CS3 445 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 PAGE5Q96GU1 130 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 C12orf66Q96MD2 445 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 VPS35Q96QK1 796 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 SEPHS2Q99611 448 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 TSG101Q99816 390 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 MGME1Q9BQP7 344 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 TRIM15Q9C019 465 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 OR2B2Q9GZK3 357 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 SHARPINQ9H0F6 387 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 TRIM45Q9H8W5 580 aaPredicted RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 CUTCQ9NTM9 273 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 EURLQ9NYK6 297 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 NFKBIL1Q9UBC1 381 aaPredicted RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 CTSFQ9UBX1 484 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 PSMD13Q9UNM6 376 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 KLF13Q9Y2Y9 288 aaPredicted RBP3.87□□□□□ -1.79
VPS50-214ENST00000477935 MMP24Q9Y5R2 645 aa3.87□□□□□ -1.79
VPS50-214ENST00000477935 DNAJC13O75165 2243 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 TENM1Q9UKZ4 2725 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 IGKV3D-20A0A0C4DH25 116 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 MGAT4DA6NG13 374 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 ERI2A8K979 691 aaKnown RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 NPIPA2E9PIF3 369 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 NPIPA3F8WFD2 350 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 DFFAO00273 331 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 HEXBP07686 556 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 SLC35G4P0C7Q5 338 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 RPL21P46778 160 aaKnown RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 OR1D4P47884 311 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 CYB561P49447 251 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 CDH6P55285 790 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 ATP5J2P56134 94 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 TPI1P60174 286 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 FASTKQ14296 549 aaKnown RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 HERC3Q15034 1050 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 EXT1Q16394 746 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 CA9Q16790 459 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 CDO1Q16878 200 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 CLEC12BQ2HXU8 276 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 FAM174BQ3ZCQ3 159 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 MARC1Q5VT66 337 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 C11orf63Q6NUN7 778 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 TMEM205Q6UW68 189 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 LRRC49Q8IUZ0 686 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 ZNF440Q8IYI8 595 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 CCDC185Q8N715 623 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 TTC29Q8NA56 475 aaPredicted RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 ZFP62Q8NB50 900 aaPredicted RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 M1APQ8TC57 530 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 METTL21AQ8WXB1 218 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 RXFP2Q8WXD0 754 aa3.86□□□□□ -1.79
VPS50-214ENST00000477935 SYN2Q92777 582 aaPredicted RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 CELF6Q96J87 481 aaKnown RBP3.86□□□□□ -1.79
VPS50-214ENST00000477935 LINC00615Q96LM1 132 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms