RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FAM71CQ8NEG0 241 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 RAB3IL1Q8TBN0 382 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 TLCD1Q96CP7 247 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 DNAJA3Q96EY1 480 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 CCL19Q99731 98 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 SAP130Q9H0E3 1048 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 ACER3Q9NUN7 267 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 KLHL9Q9P2J3 617 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 GPR52Q9Y2T5 361 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 SLCO1B7G3V0H7 640 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 SMPD2O60906 423 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 LY6G6DO95868 133 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 HEXAP06865 529 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 FESP07332 822 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 YES1P07947 543 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 CHRM4P08173 479 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 GUSBP08236 651 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 TFPIP10646 304 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 PSMB1P20618 241 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 ANXA11P50995 505 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC18A1P54219 525 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 RASGEF1BQ0VAM2 473 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 SYT14P1Q58G82 188 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 COX20Q5RI15 118 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 BEND6Q5SZJ8 279 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 P3H2Q8IVL5 708 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 ARFGAP2Q8N6H7 521 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 GLB1L3Q8NCI6 653 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 OIT3Q8WWZ8 545 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 S100PBPQ96BU1 408 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 ZNF775Q96BV0 537 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 PSD2Q9BQI7 771 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC38A1Q9H2H9 487 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 GP6Q9HCN6 339 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 CTPS2Q9NRF8 586 aa13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 NSD1Q96L73 2696 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-205ENST00000472524 HEATR1Q9H583 2144 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 H7C1Q1 480 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 SULT2B1O00204 365 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 RFXANKO14593 260 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 SMAD9O15198 467 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 ARHGEF9O43307 516 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 KLF4O43474 513 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 GCM2O75603 506 aaPredicted RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 NR2F1P10589 423 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 IDO1P14902 403 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 FPR1P21462 350 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 IL32P24001 234 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 DIO1P49895 249 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 KCNJ10P78508 379 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 PLAURQ03405 335 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 LRRC74AQ0VAA2 488 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 PDCD4Q53EL6 469 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 MAVSQ7Z434 540 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 LSRQ86X29 649 aaPredicted RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 GABRG1Q8N1C3 465 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 STEAP2Q8NFT2 490 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC25A43Q8WUT9 341 aaPredicted RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 CNOT9Q92600 299 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 PIGTQ969N2 578 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 PLPPR2Q96GM1 343 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 MAELQ96JY0 434 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 COX4I2Q96KJ9 171 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 TRNT1Q96Q11 434 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 ZNF300Q96RE9 604 aaPredicted RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 TACO1Q9BSH4 297 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 BCO1Q9HAY6 547 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 CHRNA9Q9UGM1 479 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 ING1Q9UK53 422 aaPredicted RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 LIPT1Q9Y234 373 aa13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 SPIN1Q9Y657 262 aaPredicted RBP13.96□□□□□ -0.17
CCDC88B-205ENST00000472524 CYTIPO60759 359 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 SLC22A3O75751 556 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 KRT75O95678 551 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 PLAUP00749 431 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 ADAP00813 363 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 CCNA2P20248 432 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 APOBEC1P41238 236 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 IDH2P48735 452 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 CSNK2A1P68400 391 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF704Q6ZNC4 412 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 C20orf204Q6ZNR8 217 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 LRRC74BQ6ZQY2 392 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 TMPPEQ6ZT21 453 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 GRINAQ7Z429 371 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 LRRC75A-AS1Q8N1F1 130 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 PIWIL2Q8TC59 973 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 WDR60Q8WVS4 1066 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 KISS1RQ969F8 398 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 Q96MF0 132 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 OR52B2Q96RD2 323 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 PIP5K1AQ99755 562 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 CCDC106Q9BWC9 280 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 OR10A4Q9H209 315 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 EXOSC3Q9NQT5 275 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 SLC6A13Q9NSD5 602 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 PRSS50Q9UI38 385 aa13.95□□□□□ -0.18
CCDC88B-205ENST00000472524 AP3D1O14617 1153 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms