RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 EFCAB1Q9HAE3 211 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 BCL2L10Q9HD36 194 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 A0A0G2JPF8 293 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 MBD3L4A6NDZ8 208 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 MBD3L5A6NJ08 208 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HNRNPCL2B2RXH8 293 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HNRNPCL3B7ZW38 293 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 C5orf58C9J3I9 102 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 GTPBP1O00178 669 aaKnown RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF264O43296 627 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HCRTR2O43614 444 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 GMFGO60234 142 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 EIF4E2O60573 245 aaKnown RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HNRNPCL1O60812 293 aaKnown RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 PGM3O95394 542 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 CSTAP01040 98 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 DBIP07108 87 aaKnown RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HNRNPCL4P0DMR1 293 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 UBL4AP11441 157 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC6A2P23975 617 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 DPP4P27487 766 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 RNF144AP50876 292 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 P2RX1P51575 399 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SUMO3P55854 103 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SORDQ00796 357 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 RBBP4Q09028 425 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SCARB2Q14108 478 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 ADRM1Q16186 407 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 NDUFAF6Q330K2 333 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 RPS26P11Q5JNZ5 115 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 REEP3Q6NUK4 255 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 POMZP3Q6PJE2 187 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 CBLN3Q6UW01 205 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 ENPP6Q6UWR7 440 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HACD2Q6Y1H2 254 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 ARPINQ7Z6K5 226 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 HMGN2P46Q86SG4 172 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 IFNEQ86WN2 208 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 PTOV1Q86YD1 416 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 CMIPQ8IY22 773 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 PEX5LQ8IYB4 626 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 C11orf65Q8NCR3 313 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 FAM71CQ8NEG0 241 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 TNIP2Q8NFZ5 429 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 OR10A6Q8NH74 314 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 OR14L1PQ8NHC6 308 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 WDR60Q8WVS4 1066 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SMPDL3BQ92485 455 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SH3YL1Q96HL8 342 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SPATA9Q9BWV2 254 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 CALHM2Q9HA72 323 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 TAS2R10Q9NYW0 307 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 ICAM5Q9UMF0 924 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 CAMK2AQ9UQM7 478 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC35A3Q9Y2D2 325 aa10.71□□□□□ -0.69
SQSTM1-206ENST00000466342 MBD3L3A6NE82 208 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 PHF1O43189 567 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 OIP5O43482 229 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 ZIC3O60481 467 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 THBS1P07996 1170 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 NID1P14543 1247 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 ETS2P15036 469 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 IL7RP16871 459 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 HK1P19367 917 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 PGM1P36871 562 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 GZMMP51124 257 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF41P51814 821 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 KCNJ10P78508 379 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 KRTAP1-1Q07627 177 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 SKP2Q13309 424 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 C8orf82Q6P1X6 216 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 EIF3MQ7L2H7 374 aaKnown RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 HIPK1Q86Z02 1210 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 FITM2Q8N6M3 262 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 TMCO5AQ8N6Q1 288 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 NAXEQ8NCW5 288 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 HIPK4Q8NE63 616 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 TOR1AIP2Q8NFQ8 470 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 MBD3L2Q8NHZ7 208 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 HOPXQ9BPY8 73 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 ECSITQ9BQ95 431 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 LAT2Q9GZY6 243 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 CACYBPQ9HB71 228 aaKnown RBP10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 ARL8BQ9NVJ2 186 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 TAGLN3Q9UI15 199 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 ANGPT4Q9Y264 503 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 CARD8Q9Y2G2 431 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 AP3M1Q9Y2T2 418 aa10.7□□□□□ -0.7
SQSTM1-206ENST00000466342 DOCK7Q96N67 2140 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 A0A087WZY1 265 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CLDN24A6NM45 220 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 BCAS1O75363 584 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CYP7B1O75881 506 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 UBTFL6P0CB48 400 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CHMP24386 653 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 PCGF2P35227 344 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CPA2P48052 419 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 GFRA1P56159 465 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 B3GALT5-AS1P59052 145 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms