RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ZHX1-C8orf76Q96EF9 292 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 PSD2Q9BQI7 771 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 SAP130Q9H0E3 1048 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 WDR55Q9H6Y2 383 aaPredicted RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 BCO1Q9HAY6 547 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 EXOSC3Q9NQT5 275 aaKnown RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 DLL4Q9NR61 685 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 ACER3Q9NUN7 267 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 LIPT1Q9Y234 373 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 SULT2B1O00204 365 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 SMAD9O15198 467 aaKnown RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 CYTIPO60759 359 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 GCM2O75603 506 aaPredicted RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 FESP07332 822 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 TFPIP10646 304 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 LOXP28300 417 aaPredicted RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 IL12AP29459 219 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 RYKP34925 604 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 APOBEC1P41238 236 aaKnown RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 CDKN2CP42773 168 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 DIO1P49895 249 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 KCNJ10P78508 379 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 RASGEF1BQ0VAM2 473 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 GNA13Q14344 377 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 PDCD4Q53EL6 469 aaKnown RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 ABLIM2Q6H8Q1 611 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 ALKBH2Q6NS38 261 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 ZNF621Q6ZSS3 439 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 HMGN2P46Q86SG4 172 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 KRTAP1-3Q8IUG1 177 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 CMIPQ8IY22 773 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 PNPT1Q8TCS8 783 aaKnown RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 WDR60Q8WVS4 1066 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 PLPPR2Q96GM1 343 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 TRNT1Q96Q11 434 aaKnown RBP12.4□□□□□ -0.42
USP4-206ENST00000461553 INPP5KQ9BT40 448 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 HDHD5Q9BXW7 423 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 POTEKPQ9BYX7 375 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 MANSC1Q9H8J5 431 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 EMC3Q9P0I2 261 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 CHRNA9Q9UGM1 479 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 GPR45Q9Y5Y3 372 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 PLCE1Q9P212 2302 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 NIPBLQ6KC79 2804 aaeCLIP12.4□□□□□ -0.42
USP4-206ENST00000461553 TLN2Q9Y4G6 2542 aa12.4□□□□□ -0.42
USP4-206ENST00000461553 RFXANKO14593 260 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 KLF4O43474 513 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 BCAS1O75363 584 aaPredicted RBP12.39□□□□□ -0.43
USP4-206ENST00000461553 ANP32DO95626 131 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 KRT75O95678 551 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 IL6P05231 212 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 GSNP06396 782 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 UQCRBP14927 111 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 CHRNEQ04844 493 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 P2RY6Q15077 328 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 SFRP5Q5T4F7 317 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 LRRC74BQ6ZQY2 392 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 TMPPEQ6ZT21 453 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 ANKFN1Q8N957 763 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 TLCD1Q96CP7 247 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 PERPQ96FX8 193 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 MAELQ96JY0 434 aaKnown RBP12.39□□□□□ -0.43
USP4-206ENST00000461553 ZNF300Q96RE9 604 aaPredicted RBP12.39□□□□□ -0.43
USP4-206ENST00000461553 CCDC106Q9BWC9 280 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 SLC38A1Q9H2H9 487 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 TMBIM4Q9HC24 238 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 NGBQ9NPG2 151 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 CTPS2Q9NRF8 586 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 P2RX2Q9UBL9 471 aa12.39□□□□□ -0.43
USP4-206ENST00000461553 PRAMEF27A3QJZ7 478 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 AGAP5A6NIR3 686 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 CLDN24A6NM45 220 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 ZNF724A8MTY0 619 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 SLC22A3O75751 556 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 PMS2P2O95744 297 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 ADAP00813 363 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 CHRM4P08173 479 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 NR2F1P10589 423 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 ADSLP30566 484 aaPredicted RBP12.38□□□□□ -0.43
USP4-206ENST00000461553 HTR3AP46098 478 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 OR3A2P47893 321 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 ITGADQ13349 1161 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 CAPRIN1Q14444 709 aaKnown RBP12.38□□□□□ -0.43
USP4-206ENST00000461553 TSC22D1Q15714 1073 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 SYPL1Q16563 259 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 GSTA3Q16772 222 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 SLC9B1Q4ZJI4 515 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 Q6ZT83 130 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 MSANTD1Q6ZTZ1 278 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 BHLHA15Q7RTS1 189 aaPredicted RBP12.38□□□□□ -0.43
USP4-206ENST00000461553 GALNT5Q7Z7M9 940 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 BIVMQ86UB2 503 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 PIGXQ8TBF5 258 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 PIWIL2Q8TC59 973 aaKnown RBP12.38□□□□□ -0.43
USP4-206ENST00000461553 TMEM171Q8WVE6 324 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 C18orf12Q96KH6 178 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 USB1Q9BQ65 265 aaKnown RBP12.38□□□□□ -0.43
USP4-206ENST00000461553 CXorf56Q9H5V9 222 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 RMND5AQ9H871 391 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 ZIM2Q9NZV7 527 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms