RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 C4orf51C9J302 202 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 H7C4K7 107 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 IFNGR1P15260 489 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 PPP3CBP16298 524 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 MAT2AP31153 395 aaKnown RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 STAT5AP42229 794 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 RAG2P55895 527 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 MAT1AQ00266 395 aaKnown RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 C9orf64Q5T6V5 341 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TPRA1Q86W33 373 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 CDH26Q8IXH8 852 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 LINC00471Q8N535 108 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 DNAAF1Q8NEP3 725 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 VN1R2Q8NFZ6 395 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 WDR34Q96EX3 536 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 OR7D2Q96RA2 312 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 PBX4Q9BYU1 374 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 CHST6Q9GZX3 395 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 WDR13Q9H1Z4 485 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 SYNPO2LQ9H987 977 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 HMX1Q9NP08 348 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM138Q9NPI0 162 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 SC5DO75845 299 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 HPP00738 406 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 CTSLP07711 333 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 SSR2P43308 183 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 KHKP50053 298 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 GDI2P50395 445 aaKnown RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 RAP2BP61225 183 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ATXN7L3Q14CW9 347 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 DEFB115Q30KQ5 88 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 PUS10Q3MIT2 529 aaKnown RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 FAM199XQ6PEV8 388 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 C11orf88Q6PI97 169 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TRAM1L1Q8N609 369 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 OR5M9Q8NGP3 310 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 OTUB2Q96DC9 234 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ELP4Q96EB1 424 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF75AQ96N20 296 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 PINK1Q9BXM7 581 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 AICDAQ9GZX7 198 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ADGRL4Q9HBW9 690 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 NOX4Q9NPH5 578 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 AHSPQ9NZD4 102 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 GLS2Q9UI32 602 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 PPIL1Q9Y3C6 166 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 HEATR5BQ9P2D3 2071 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 OR5K4A6NMS3 321 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 KCNAB3O43448 404 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 KRT33AO76009 404 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TIMP2P16035 220 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 FLI1Q01543 452 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 DHODHQ02127 395 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TGM3Q08188 693 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TAF1CQ15572 869 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TCTN1Q2MV58 587 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 LRRC37A5PQ49AS3 106 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF805Q5CZA5 627 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 HACD4Q5VWC8 232 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF626Q68DY1 528 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 HSD17B13Q7Z5P4 300 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM25Q86YD3 366 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 OR9A2Q8NGT5 310 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 C1orf216Q8TAB5 229 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 COL26A1Q96A83 441 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 RAD51AP1Q96B01 352 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 CNRIP1Q96F85 164 aaPredicted RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 MFFQ9GZY8 342 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF304Q9HCX3 659 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 TM7SF3Q9NS93 570 aa10.83□□□□□ -0.68
CPSF3-202ENST00000460593 USP36Q9P275 1121 aaKnown RBP10.83□□□□□ -0.68
CPSF3-202ENST00000460593 COL4A3Q01955 1670 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 NEDD8-MDP1E9PL57 170 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 NDUFS4O43181 175 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 KLF4O43474 513 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 PPP1R3DO95685 299 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 SBK2P0C263 348 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 C4BPBP20851 252 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 TAS2R38P59533 333 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 GUCA2BQ16661 112 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 DMKNQ6E0U4 476 aaPredicted RBP10.82□□□□□ -0.68
CPSF3-202ENST00000460593 KLHDC8AQ8IYD2 350 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 FAM98AQ8NCA5 519 aaKnown RBP10.82□□□□□ -0.68
CPSF3-202ENST00000460593 PXT1Q8NFP0 134 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 CMSS1Q9BQ75 279 aaKnown RBP10.82□□□□□ -0.68
CPSF3-202ENST00000460593 SYNDIG1Q9H7V2 258 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 TAS2R10Q9NYW0 307 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 ST6GALNAC2Q9UJ37 374 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 PLCL2Q9UPR0 1127 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 ARID1AO14497 2285 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM272A0A1B0GTI8 110 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 LINC00587B1AMM8 73 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 PIN1P1O15428 100 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 MAOBP27338 520 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 KCNJ3P48549 501 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 KCNAB1Q14722 419 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 MBOAT2Q6ZWT7 520 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 C17orf64Q86WR6 236 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 NUDT13Q86X67 352 aa10.82□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF547Q8IVP9 402 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms