RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 ZNF175Q9Y473 711 aa13.08□□□□□ -0.32
USP39-206ENST00000448971 CAPN7Q9Y6W3 813 aa13.08□□□□□ -0.32
USP39-206ENST00000448971 ARHGAP21Q5T5U3 1957 aa13.08□□□□□ -0.32
USP39-206ENST00000448971 KIAA1549Q9HCM3 1950 aa13.08□□□□□ -0.32
USP39-206ENST00000448971 A0A0G2JPF8 293 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 HNRNPCL2B2RXH8 293 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 HNRNPCL3B7ZW38 293 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 CXCL13O43927 109 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 HNRNPCL1O60812 293 aaKnown RBP13.07□□□□□ -0.32
USP39-206ENST00000448971 RCBTB2O95199 551 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 HNRNPCL4P0DMR1 293 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 ARAFP10398 606 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 BMP2P12643 396 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 KLK2P20151 261 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 UQCRC1P31930 480 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 CPA2P48052 419 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 MTPNP58546 118 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 SIRPAP78324 504 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 PLAURQ03405 335 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 MERTKQ12866 999 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 FOXF2Q12947 444 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 MYBPHQ13203 477 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 LARS2Q15031 903 aaKnown RBP13.07□□□□□ -0.32
USP39-206ENST00000448971 CYP51A1Q16850 503 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 CTU2Q2VPK5 515 aaKnown RBP13.07□□□□□ -0.32
USP39-206ENST00000448971 RETREG3Q86VR2 466 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 DPP10Q8N608 796 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 CNEP1R1Q8N9A8 125 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 NFKBIDQ8NI38 313 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 CNOT9Q92600 299 aaKnown RBP13.07□□□□□ -0.32
USP39-206ENST00000448971 ADGRG7Q96K78 797 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 ZNF317Q96PQ6 595 aaPredicted RBP13.07□□□□□ -0.32
USP39-206ENST00000448971 CGREF1Q99674 301 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 IKZF5Q9H5V7 419 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 SAR1AQ9NR31 198 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 SERINC1Q9NRX5 453 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 SPIN1Q9Y657 262 aaPredicted RBP13.07□□□□□ -0.32
USP39-206ENST00000448971 MED12Q93074 2177 aa13.07□□□□□ -0.32
USP39-206ENST00000448971 A0A0J9YW62 118 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 BBIP1A8MTZ0 92 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 DYNC1I1O14576 645 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 AP3D1O14617 1153 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 MRASO14807 208 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 PLGP00747 810 aaPredicted RBP13.06□□□□□ -0.32
USP39-206ENST00000448971 SHC1P29353 583 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 SESN3P58005 492 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 CDK6Q00534 326 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 KLF10Q13118 480 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 SCARB2Q14108 478 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 CAPRIN1Q14444 709 aaKnown RBP13.06□□□□□ -0.32
USP39-206ENST00000448971 TRMT5Q32P41 509 aaKnown RBP13.06□□□□□ -0.32
USP39-206ENST00000448971 SLC25A53Q5H9E4 307 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 RNF220Q5VTB9 566 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 PRAMEF8Q5VWM4 474 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 PRAMEF7Q5VXH5 474 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 AP1ARQ63HQ0 302 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 REP15Q6BDI9 236 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 DLEU7Q6UYE1 221 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 PLEKHM3Q6ZWE6 761 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 SNX32Q86XE0 403 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 C10orf111Q8N326 155 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 REXO5Q96IC2 774 aaKnown RBP13.06□□□□□ -0.32
USP39-206ENST00000448971 ARMC7Q9H6L4 198 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 DLL4Q9NR61 685 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 ACER3Q9NUN7 267 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 PACSIN3Q9UKS6 424 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 ANGPT4Q9Y264 503 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 IFT52Q9Y366 437 aa13.06□□□□□ -0.32
USP39-206ENST00000448971 A0A1W2PNV4 684 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 CDHR4A6H8M9 788 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 CFAP73A6NFT4 308 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 ETV2O00321 342 aaPredicted RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 DNAJA2O60884 412 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 SMNDC1O75940 238 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP39-206ENST00000448971 NTN1O95631 604 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 IL18BPO95998 194 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 THBS1P07996 1170 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 PABPC4LP0CB38 370 aaKnown RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 GPX2P18283 190 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 CPOXP36551 454 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 IDH2P48735 452 aaKnown RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 TMEM176BQ3YBM2 270 aaPredicted RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 RUNDC3AQ59EK9 446 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 ZNF311Q5JNZ3 666 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 GRINAQ7Z429 371 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 SPATA21Q7Z572 469 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 LUZP2Q86TE4 346 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 KRT73Q86Y46 540 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 ZNF440Q8IYI8 595 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 SLC25A43Q8WUT9 341 aaPredicted RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 CPNE4Q96A23 557 aaPredicted RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 ZNF524Q96C55 264 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 ANKRD27Q96NW4 1050 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 GSX1Q9H4S2 264 aaPredicted RBP13.05□□□□□ -0.32
USP39-206ENST00000448971 RNF122Q9H9V4 155 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 BCL2L10Q9HD36 194 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 TIGARQ9NQ88 270 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 RLIMQ9NVW2 624 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 ARMCX1Q9P291 453 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 ST6GALNAC2Q9UJ37 374 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms