RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 A0A1B0GX12 115 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 SHISA8B8ZZ34 492 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 THRBP10828 461 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 PNMTP11086 282 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 CXCR1P25024 350 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 ELK4P28324 431 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 SLC7A1P30825 629 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 CDH12P55289 794 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 GFRA1P56159 465 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 PIN1Q13526 163 aaPredicted RBP14.27□□□□□ -0.13
USP40-206ENST00000443711 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.27□□□□□ -0.13
USP40-206ENST00000443711 IQCCQ4KMZ1 466 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 ALG10BQ5I7T1 473 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 SWT1Q5T5J6 900 aaKnown RBP14.27□□□□□ -0.13
USP40-206ENST00000443711 TSEN54Q7Z6J9 526 aaKnown RBP14.27□□□□□ -0.13
USP40-206ENST00000443711 PAPD5Q8NDF8 572 aaKnown RBP14.27□□□□□ -0.13
USP40-206ENST00000443711 RNF217Q8TC41 542 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 DUS3LQ96G46 650 aaKnown RBP14.27□□□□□ -0.13
USP40-206ENST00000443711 SLC41A3Q96GZ6 507 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 GPR137Q96N19 417 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 BARD1Q99728 777 aaKnown RBP14.27□□□□□ -0.13
USP40-206ENST00000443711 NPAS1Q99742 590 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 FNDC11Q9BVV2 318 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 CHID1Q9BWS9 393 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 C12orf10Q9HB07 376 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 PLSCR2Q9NRY7 297 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 OSGIN1Q9UJX0 560 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 A4GNTQ9UNA3 340 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 SLC6A5Q9Y345 797 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 TMED7Q9Y3B3 224 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 ZNF337Q9Y3M9 751 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 LIPGQ9Y5X9 500 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 MED12Q93074 2177 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 GTF3C1Q12789 2109 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ELOA3DA6NLF2 546 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 J3KTA2 159 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SEMA7AO75326 666 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 FKBP6O75344 327 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ACTL6AO96019 429 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 FKBP2P26885 142 aaKnown RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 MAGEA2P43356 314 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 MAP2K6P52564 334 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SMIM11AP58511 58 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ST3GAL3Q11203 375 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SELENBP1Q13228 472 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ELOA3BQ3SY89 546 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 PRR30Q53SZ7 412 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 POMZP3Q6PJE2 187 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 GDF7Q7Z4P5 450 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ATG4DQ86TL0 474 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 TSPYL5Q86VY4 417 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 ADGRG3Q86Y34 549 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 OFCC1Q8IZS5 231 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 GHDCQ8N2G8 530 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ELOA3Q8NG57 546 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SLC38A4Q969I6 547 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ABTB1Q969K4 478 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 BBC3Q96PG8 261 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 PIP5K1AQ99755 562 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SLX1AQ9BQ83 275 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 ACAD8Q9UKU7 415 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SLC7A7Q9UM01 511 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 SPIN1Q9Y657 262 aaPredicted RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 AP4B1Q9Y6B7 739 aa14.26□□□□□ -0.13
USP40-206ENST00000443711 PRRC2CQ9Y520 2896 aaKnown RBP14.26□□□□□ -0.13
USP40-206ENST00000443711 AQP7O14520 342 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 FFAR1O14842 300 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 CHP2O43745 196 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 EFNA2O43921 213 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 WISP2O76076 250 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 DIRAS1O95057 198 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 LYPD3O95274 346 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 WISP1O95388 367 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 MT-ND1P03886 318 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 PEPDP12955 493 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 BMP7P18075 431 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 CCNA2P20248 432 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 MLLT10P55197 1068 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 RAC1P63000 192 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 TRAM2Q15035 370 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 NHSL2Q5HYW2 709 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 VASNQ6EMK4 673 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 C3orf33Q6P1S2 294 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 ARHGAP11AQ6P4F7 1023 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 PIK3C3Q8NEB9 887 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 CPT1CQ8TCG5 803 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 SLC25A43Q8WUT9 341 aaPredicted RBP14.25□□□□□ -0.13
USP40-206ENST00000443711 SLCO4A1Q96BD0 722 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 MPP4Q96JB8 637 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 ARMC1Q9NVT9 282 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 RHCGQ9UBD6 479 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 CHRNA9Q9UGM1 479 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 AP4S1Q9Y587 144 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 MPDZO75970 2070 aa14.25□□□□□ -0.13
USP40-206ENST00000443711 ZFYVE26Q68DK2 2539 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 BOD1L1Q8NFC6 3051 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 A0A087WUJ7 227 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 A0A1B0GTH9 108 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 GJE1A6NN92 205 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 H3BML4 177 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms