RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ZNF232Q9UNY5 417 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 DSPPQ9NZW4 1301 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 ABCA4P78363 2273 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 CCDC168Q8NDH2 2452 aa13.58□□□□□ -0.23
LIMS3-201ENST00000437679 CSMD1Q96PZ7 3565 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CFAP73A6NFT4 308 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 EVPLLA8MZ36 301 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 C5orf58C9J3I9 102 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 AP3D1O14617 1153 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CTAG2O75638 210 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CGAP01215 116 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 VIMP08670 466 aaKnown RBP13.58□□□□□ -0.24
LIMS3-201ENST00000437679 NUDT7P0C024 238 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 TFPIP10646 304 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 BMP2P12643 396 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 POU2F1P14859 743 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 FKBP2P26885 142 aaKnown RBP13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CD79BP40259 229 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 HTR3AP46098 478 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 PCYT1AP49585 367 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 RAC3P60763 192 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 PLAURQ03405 335 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 ZSWIM7Q19AV6 140 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 SYT14P1Q58G82 188 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 RPS26P11Q5JNZ5 115 aaPredicted RBP13.58□□□□□ -0.24
LIMS3-201ENST00000437679 GCNT6Q5T4J0 391 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 PRAMEF8Q5VWM4 474 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 PRAMEF7Q5VXH5 474 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF474Q6S9Z5 364 aaPredicted RBP13.58□□□□□ -0.24
LIMS3-201ENST00000437679 FCRLAQ7L513 359 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 VRK2Q86Y07 508 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 SLC43A2Q8N370 569 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF610Q8N9Z0 462 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 RNF128Q8TEB7 428 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 DACH2Q96NX9 599 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CCDC106Q9BWC9 280 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 TMEM120AQ9BXJ8 343 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 ARMC7Q9H6L4 198 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CTPS2Q9NRF8 586 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 PLSCR4Q9NRQ2 329 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 VAPAQ9P0L0 249 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CHRNA9Q9UGM1 479 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 CORO2BQ9UQ03 480 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF443Q9Y2A4 671 aaPredicted RBP13.58□□□□□ -0.24
LIMS3-201ENST00000437679 IFT52Q9Y366 437 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 NDUFAF1Q9Y375 327 aa13.58□□□□□ -0.24
LIMS3-201ENST00000437679 AKAP6Q13023 2319 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 SH3D21A4FU49 640 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 CDHR4A6H8M9 788 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 A6NNC1 897 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 FAAHO00519 579 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 CASKO14936 926 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 ANGPT2O15123 496 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 PRKD3O94806 890 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 THBS1P07996 1170 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 ENPP1P22413 925 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 CSNK2A1P68400 391 aaPredicted RBP13.57□□□□□ -0.24
LIMS3-201ENST00000437679 FAM27E3Q08E93 113 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 EPS8Q12929 822 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 DAZAP2Q15038 168 aaPredicted RBP13.57□□□□□ -0.24
LIMS3-201ENST00000437679 TMEM201Q5SNT2 666 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 RNF220Q5VTB9 566 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 FBXW10Q5XX13 1052 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF836Q6ZNA1 936 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 STK32CQ86UX6 486 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 MSRB3Q8IXL7 192 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 BBS10Q8TAM1 723 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 ABHD3Q8WU67 409 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 MAL2Q969L2 176 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 GPATCH1Q9BRR8 931 aaKnown RBP13.57□□□□□ -0.24
LIMS3-201ENST00000437679 TACO1Q9BSH4 297 aaKnown RBP13.57□□□□□ -0.24
LIMS3-201ENST00000437679 POLDIP3Q9BY77 421 aaKnown RBP13.57□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF385DQ9H6B1 395 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 GP6Q9HCN6 339 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 BCL2L10Q9HD36 194 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 FANCFQ9NPI8 374 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 FGFR1OP2Q9NVK5 253 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 RLIMQ9NVW2 624 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 GMEB1Q9Y692 573 aa13.57□□□□□ -0.24
LIMS3-201ENST00000437679 TRBV5-3A0A0A0MS03 114 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 TMED7-TICAM2A0A0A6YYA0 188 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 IGHV3-15A0A0B4J1V0 119 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 ENO4A6NNW6 628 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 SULT2B1O00204 365 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 ADAM11O75078 769 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 CD1EP15812 388 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 AGTR1P30556 359 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 SLC1A3P43003 542 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 CLK1P49759 484 aaKnown RBP13.56□□□□□ -0.24
LIMS3-201ENST00000437679 DIO1P49895 249 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 POLR2HP52434 150 aaKnown RBP13.56□□□□□ -0.24
LIMS3-201ENST00000437679 ARFIP2P53365 341 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 COPZ1P61923 177 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 EXOC3L2Q2M3D2 409 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF311Q5JNZ3 666 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 TMPPEQ6ZT21 453 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF550Q7Z398 422 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 CDH24Q86UP0 819 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 ADGRG3Q86Y34 549 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 TSPEARQ8WU66 669 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms