RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 WDR45Q9Y484 360 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 SPIN1Q9Y657 262 aaPredicted RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 CCT8L1PA6NM43 557 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 ESPNB1AK53 854 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 OVOL3O00110 214 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 FCMRO60667 390 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 CRLF1O75462 422 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 UGT2B17O75795 530 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 IGHV4-39P01824 125 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 BPGMP07738 259 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 OR12D1P0DN82 309 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 CREB1P16220 341 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 CCNA2P20248 432 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 CLDN8P56748 225 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 CHRNEQ04844 493 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 KRTAP1-1Q07627 177 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 ZNF141Q15928 474 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 PGGHGQ32M88 737 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 ARHGAP11BQ3KRB8 267 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 ABLIM2Q6H8Q1 611 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 SEZ6L2Q6UXD5 910 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 EIF3MQ7L2H7 374 aaKnown RBP12.83□□□□□ -0.36
SDC1-204ENST00000429035 LSRQ86X29 649 aaPredicted RBP12.83□□□□□ -0.36
SDC1-204ENST00000429035 RIMKLAQ8IXN7 391 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 OR52N5Q8NH56 324 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 SLC25A43Q8WUT9 341 aaPredicted RBP12.83□□□□□ -0.36
SDC1-204ENST00000429035 XAGE5Q8WWM1 108 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 RAB8BQ92930 207 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 USB1Q9BQ65 265 aaKnown RBP12.83□□□□□ -0.36
SDC1-204ENST00000429035 DPY30Q9C005 99 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 TRIM2Q9C040 744 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 ZNF350Q9GZX5 532 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 CTPS2Q9NRF8 586 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 YAE1D1Q9NRH1 226 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 FAIMQ9NVQ4 179 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 NPAP1Q9NZP6 1156 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 LGALS13Q9UHV8 139 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 KCNE5Q9UJ90 142 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 NOSIPQ9Y314 301 aaKnown RBP12.83□□□□□ -0.36
SDC1-204ENST00000429035 PLCE1Q9P212 2302 aa12.83□□□□□ -0.36
SDC1-204ENST00000429035 ALPK2Q86TB3 2170 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 A0A1W2PR80 420 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 ZNF724A8MTY0 619 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 KIAA0513O60268 411 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 NUDT17P0C025 328 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 COX5AP20674 150 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 CHI3L1P36222 383 aaPredicted RBP12.82□□□□□ -0.36
SDC1-204ENST00000429035 KHKP50053 298 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 ZNF83P51522 516 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 NUDT6P53370 316 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 VSNL1P62760 191 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 EMX2Q04743 252 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 SPOCK1Q08629 439 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 CHI3L2Q15782 390 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 GPAT3Q53EU6 434 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 TIMM23BQ5SRD1 257 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 CASP12Q6UXS9 341 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 TMPPEQ6ZT21 453 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 CXXC5Q7LFL8 322 aaKnown RBP12.82□□□□□ -0.36
SDC1-204ENST00000429035 NUDCD3Q8IVD9 361 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 ZNF781Q8N8C0 355 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 APH1AQ96BI3 265 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 TRAF4Q9BUZ4 470 aaPredicted RBP12.82□□□□□ -0.36
SDC1-204ENST00000429035 BARX1Q9HBU1 254 aaPredicted RBP12.82□□□□□ -0.36
SDC1-204ENST00000429035 ACER3Q9NUN7 267 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 CHRNA9Q9UGM1 479 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 SLC35A3Q9Y2D2 325 aa12.82□□□□□ -0.36
SDC1-204ENST00000429035 SHISA9B4DS77 424 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 M0R1B8 84 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 RNASET2O00584 256 aaKnown RBP12.81□□□□□ -0.36
SDC1-204ENST00000429035 ITM2AO43736 263 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 SSX4O60224 188 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 BCAS1O75363 584 aaPredicted RBP12.81□□□□□ -0.36
SDC1-204ENST00000429035 OR2B6P58173 313 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 MAPK14Q16539 360 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 C9orf135Q5VTT2 229 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 TYW3Q6IPR3 259 aaKnown RBP12.81□□□□□ -0.36
SDC1-204ENST00000429035 HEPHL1Q6MZM0 1159 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 SLC22A25Q6T423 547 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 ZNF433Q8N7K0 673 aaPredicted RBP12.81□□□□□ -0.36
SDC1-204ENST00000429035 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.81□□□□□ -0.368e-8■■■■■ 27.2
SDC1-204ENST00000429035 ZNF75CPQ92670 426 aaPredicted RBP12.81□□□□□ -0.36
SDC1-204ENST00000429035 CACNG6Q9BXT2 260 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 OR11A1Q9GZK7 315 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 AKTIPQ9H8T0 292 aa12.81□□□□□ -0.36
SDC1-204ENST00000429035 OR5H1A6NKK0 313 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 CLDN24A6NM45 220 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 ETV2O00321 342 aaPredicted RBP12.8□□□□□ -0.36
SDC1-204ENST00000429035 AGR2O95994 175 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 UQCRC2P22695 453 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 PGM1P36871 562 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 NME5P56597 212 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 FUT5Q11128 374 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 AGAP6Q5VW22 663 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 KLHL17Q6TDP4 642 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 TMEM108Q6UXF1 575 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 FRRS1Q6ZNA5 592 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 GRINAQ7Z429 371 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 MTDHQ86UE4 582 aaKnown RBP12.8□□□□□ -0.36
SDC1-204ENST00000429035 ARFGAP2Q8N6H7 521 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms