RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SNPHO15079 494 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 MITFO75030 526 aaPredicted RBP15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 WDPCPO95876 746 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 GASTP01350 101 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 IFI30P13284 250 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 TACR3P29371 465 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 CAPGP40121 348 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 CD96P40200 585 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 POLR2HP52434 150 aaKnown RBP15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 ARG2P78540 354 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 MFAP5Q13361 173 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 OR1C1Q15619 314 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 POMZP3Q6PJE2 187 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 LRRC69Q6ZNQ3 347 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 MDGA2Q7Z553 956 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 OR2M3Q8NG83 312 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 TMEM41AQ96HV5 264 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 FAM46AQ96IP4 442 aaKnown RBP15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 C5orf34Q96MH7 638 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 DCBLD2Q96PD2 775 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 NIPSNAP1Q9BPW8 284 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 PRSS27Q9BQR3 290 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 DKKL1Q9UK85 242 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 VDAC3Q9Y277 283 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 LRCH1Q9Y2L9 728 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 PCDHGB6Q9Y5F9 930 aa15.59■□□□□ 0.09
CCDC28B-202ENST00000421922 FASNP49327 2511 aaKnown RBP15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 OR5H15A6NDH6 313 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 PIP5K1CO60331 668 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 LYPD3O95274 346 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 GPR4P46093 362 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 COX10Q12887 443 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 MED21Q13503 144 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 NHSL2Q5HYW2 709 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 ZNF770Q6IQ21 691 aaPredicted RBP15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 C1orf94Q6P1W5 598 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 WDR88Q6ZMY6 472 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 ATG4DQ86TL0 474 aaPredicted RBP15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 MED17Q9NVC6 651 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 PLA2G3Q9NZ20 509 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 DKK4Q9UBT3 224 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 BOKQ9UMX3 212 aaPredicted RBP15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 ZZEF1O43149 2961 aa15.58■□□□□ 0.08
CCDC28B-202ENST00000421922 A0A087WZY1 265 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 H0YAE9 185 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 H3BN98 237 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 ADAM10O14672 748 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 SAGP10523 405 aaPredicted RBP15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 CD46P15529 392 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 CCNA2P20248 432 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 DNASE1L1P49184 302 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 CRYZQ08257 329 aaKnown RBP15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 TSPAN31Q12999 210 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 KCNAB2Q13303 367 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 TOMM34Q15785 309 aaPredicted RBP15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 SPINK14Q6IE38 97 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 KLHL17Q6TDP4 642 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 PRICKLE2Q7Z3G6 844 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 ZER1Q7Z7L7 766 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 PARP8Q8N3A8 854 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 C10orf53Q8N6V4 93 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 FADS6Q8N9I5 356 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 PFN4Q8NHR9 129 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 CNBD2Q96M20 576 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 FRMD6Q96NE9 622 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 SLC19A3Q9BZV2 496 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 RNF32Q9H0A6 362 aa15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 KLF13Q9Y2Y9 288 aaPredicted RBP15.57■□□□□ 0.08
CCDC28B-202ENST00000421922 IGF2RP11717 2491 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 TMED7-TICAM2A0A0A6YYA0 188 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 DLGAP1O14490 977 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 BCKDKO14874 412 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 NTN1O95631 604 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 OSMP13725 252 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 CNR1P21554 472 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 FPR3P25089 353 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 POU1F1P28069 291 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 OMPP47874 163 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 ESRRGP62508 458 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 PRKCDQ05655 676 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 NPRL3Q12980 569 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 TOMM20Q15388 145 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 TIGD3Q6B0B8 471 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 KRT80Q6KB66 452 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 SPACA3Q8IXA5 215 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 BPIFA2Q96DR5 249 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 SGTBQ96EQ0 304 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 C1GALT1C1Q96EU7 318 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 MBOAT4Q96T53 435 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 FAM173AQ9BQD7 235 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 TMEM43Q9BTV4 400 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 GABARAPL3Q9BY60 117 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 ADAM19Q9H013 955 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 SERINC1Q9NRX5 453 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 FAM118AQ9NWS6 357 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 B4GALT7Q9UBV7 327 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 OSGIN1Q9UJX0 560 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms