RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TVP23AA6NH52 213 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 AGAP5A6NIR3 686 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 PRODHO43272 600 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 OR2J2O76002 312 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 AQP2P41181 271 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 VBP1P61758 197 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 GABREP78334 506 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 PPP2R2BQ00005 443 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 CHAF1BQ13112 559 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 HES3Q5TGS1 186 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 HMBOX1Q6NT76 420 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 PAMR1Q6UXH9 720 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 CARFQ8N187 725 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 OR4N2Q8NGD1 307 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 COX4I2Q96KJ9 171 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ZFP3Q96NJ6 502 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 WDR12Q9GZL7 423 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 ZNF696Q9H7X3 374 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 KLHL21Q9UJP4 597 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 MCTS1Q9ULC4 181 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 TMED7Q9Y3B3 224 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ZNF879B4DU55 563 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 FOXD2O60548 495 aaPredicted RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 THBS1P07996 1170 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 F8A1P23610 371 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 RHAGQ02094 409 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 FOXC1Q12948 553 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 RGS21Q2M5E4 152 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ZNF613Q6PF04 617 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 XKR5Q6UX68 686 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 MBOAT2Q6ZWT7 520 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 NAXDQ8IW45 347 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 NAXEQ8NCW5 288 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 UBASH3BQ8TF42 649 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 TTYH2Q9BSA4 534 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 NUDT9Q9BW91 350 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 BCL2L10Q9HD36 194 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SEC14L4Q9UDX3 406 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SH3PXD2BA1X283 911 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 KHDRBS3O75525 346 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 CYB5AP00167 134 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 LCKP06239 509 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 POLR2HP52434 150 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 CSNK2A1P68400 391 aaPredicted RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 EIF3IQ13347 325 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 TCTN3Q6NUS6 607 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 MZT2BQ6NZ67 158 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ZNF367Q7RTV3 350 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 UBE3DQ7Z6J8 389 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 GPALPP1Q8IXQ4 340 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 RNF113BQ8IZP6 322 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 DNAJC22Q8N4W6 341 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 LSM14AQ8ND56 463 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 FAR1Q8WVX9 515 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 FOXN4Q96NZ1 517 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ZPBPQ9BS86 351 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SLC38A1Q9H2H9 487 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 APMAPQ9HDC9 416 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SEMA4GQ9NTN9 838 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 OCIAD1Q9NX40 245 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SH3BGRL2Q9UJC5 107 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 NOX1Q9Y5S8 564 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 PEX16Q9Y5Y5 336 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 A0A1W2PS29 197 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SERTM1A2A2V5 107 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SLC16A7O60669 478 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ICOSLGO75144 302 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ATP1B1P05026 303 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 GDI2P50395 445 aaKnown RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 RORCP51449 518 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 SLC26A5P58743 744 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 ADAM8P78325 824 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 POU4F2Q12837 409 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 RHBDD2Q6NTF9 364 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 B3GLCTQ6Y288 498 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 CMIPQ8IY22 773 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 PCDHGA5Q9Y5G8 931 aa8.39□□□□□ -1.07
LIG4-202ENST00000405925 GPC6Q9Y625 555 aaPredicted RBP8.39□□□□□ -1.07
LIG4-202ENST00000405925 NBASA2RRP1 2371 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 A0A087WUU8 490 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 TRBV2A0A0J9YWF9 115 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 A0A1W2PR77 199 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 STMND1H3BQB6 276 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 PDCD5O14737 125 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 RRP8O43159 456 aaKnown RBP8.38□□□□□ -1.07
LIG4-202ENST00000405925 CHP2O43745 196 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 DAP3P51398 398 aaKnown RBP8.38□□□□□ -1.07
LIG4-202ENST00000405925 RNF4P78317 190 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 DUSP8Q13202 625 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 COL28A1Q2UY09 1125 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 WDR74Q6RFH5 385 aaPredicted RBP8.38□□□□□ -1.07
LIG4-202ENST00000405925 PRSS48Q7RTY5 328 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 CHDHQ8NE62 594 aaPredicted RBP8.38□□□□□ -1.07
LIG4-202ENST00000405925 BARD1Q99728 777 aaKnown RBP8.38□□□□□ -1.07
LIG4-202ENST00000405925 PRRX2Q99811 253 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 TEX13CA0A0J9YWL9 993 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 SPAARA0A1B0GVQ0 90 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 A0A1W2PRQ8 180 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 CLDN25C9JDP6 229 aa8.38□□□□□ -1.07
LIG4-202ENST00000405925 RAD1O60671 282 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms