RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 LRRC28Q86X40 367 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC35F3Q8IY50 421 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ZFP82Q8N141 532 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM163Q8TC26 289 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 RAB40AQ8WXH6 277 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 PBX4Q9BYU1 374 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 STARD5Q9NSY2 213 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CST9LP1Q5W188 147 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM71Q6P5X7 295 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF322Q6U7Q0 402 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CD200R1Q8TD46 325 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CNTNAP3Q9BZ76 1288 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC23A2Q9UGH3 650 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF223Q9UK11 482 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 LDB3O75112 727 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 PSMB10P40306 273 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 GSCP56915 257 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 RTL10Q7L3V2 364 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 SAP130Q9H0E3 1048 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MSTNO14793 375 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 LTBQ06643 244 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ENTPD8Q5MY95 495 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 LCN10Q6JVE6 187 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 OR7G1Q8NGA0 311 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 OR52E1Q8NGJ3 308 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 BORCS6Q96GS4 357 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MMP28Q9H239 520 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 UBQLN4Q9NRR5 601 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 A0A0A6YYC8 382 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 I3L1I5 382 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MED6O75586 246 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ZIC2O95409 532 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CLDN6P56747 220 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 RAB11AP62491 216 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MAMDC4Q6UXC1 1216 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 DLK2Q6UY11 383 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MMP21Q8N119 569 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ITFG2Q969R8 447 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ITPKCQ96DU7 683 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MOCOSQ96EN8 888 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 OCSTAMPQ9BR26 566 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MCOLN1Q9GZU1 580 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 NOX3Q9HBY0 568 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CNOT2Q9NZN8 540 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 INTS6Q9UL03 887 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 PIK3C2AO00443 1686 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 PRSS38A1L453 326 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 TACR3P29371 465 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 LTB4RQ15722 352 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 VASNQ6EMK4 673 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 NAT6Q93015 286 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 SIDT1Q9NXL6 827 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 OR14J1Q9UGF5 321 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MYH4Q9Y623 1939 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 PRKAR1BP31321 381 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 LSAMPQ13449 338 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SQSTM1Q13501 440 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC14A2Q15849 920 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SKA3Q8IX90 412 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 RNF175Q8N4F7 328 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 NPWQ8N729 165 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 RBMXL3Q8N7X1 1067 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 ANKRD19PQ9H560 264 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 FKRPQ9H9S5 495 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 C1orf123Q9NWV4 160 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 PCDHGA1Q9Y5H4 931 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 MYH9P35579 1960 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF705GA8MUZ8 300 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF701M0R085 212 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 TIMM8AO60220 97 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 MRPL33O75394 65 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 PRKACBP22694 351 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 PITX1P78337 314 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 STEAP3Q658P3 488 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 HEPHL1Q6MZM0 1159 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC22A25Q6T423 547 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 GLB1L2Q8IW92 636 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 NANPQ8TBE9 248 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 HHIPQ96QV1 700 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OR7D2Q96RA2 312 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 CMSS1Q9BQ75 279 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 ULBP2Q9BZM5 246 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OR6C2Q9NZP2 312 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 NPIPB15A6NHN6 443 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OR1Q1Q15612 314 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 CMPK2Q5EBM0 449 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OPN5Q6U736 354 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OR14A16Q8NHC5 309 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 BSCL2Q96G97 398 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 VN1R3Q9BXE9 311 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 DDX31Q9H8H2 851 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SDR39U1Q9NRG7 319 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 CREBZFQ9NS37 354 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM184BQ9Y519 407 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 ENSAO43768 121 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 DCTP40126 519 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 NKX2-5P52952 324 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 MGAT3Q09327 533 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 PM20D1Q6GTS8 502 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 CD163Q86VB7 1156 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms