RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 FKBP2P26885 142 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 C5orf46Q6UWT4 87 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 BHLHE23Q8NDY6 225 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 OR52E2Q8NGJ4 325 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 AKAP1Q92667 903 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 C11orf24Q96F05 449 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 MNTQ99583 582 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 GABRG3Q99928 467 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 CTSFQ9UBX1 484 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 STOML2Q9UJZ1 356 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 KLK13Q9UKR3 277 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TMED7Q9Y3B3 224 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 UBR2Q8IWV8 1755 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ARFGEF2Q9Y6D5 1785 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 APEHP13798 732 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 FOLR1P15328 257 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 GPR6P46095 362 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 CEBPGP53567 150 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 AP3S2P59780 193 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TYSND1Q2T9J0 566 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NRN1LQ496H8 165 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 SCGB2B2Q4G0G5 96 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TRMT10BQ6PF06 316 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 DCDC5Q6ZRR9 648 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PQLC3Q8N755 202 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 C3orf56Q8N813 242 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ST8SIA2Q92186 375 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TSLPQ969D9 159 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PLLPQ9Y342 182 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NOS1APO75052 506 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 HTR1EP28566 365 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 GALEQ14376 348 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TGIF1Q15583 401 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 SPINK14Q6IE38 97 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 CCSAPQ6IQ19 270 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 SULF2Q8IWU5 870 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 OR2V1Q8NHB1 315 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF480Q8WV37 535 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF285Q96NJ3 590 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TRAPPC2LQ9UL33 140 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TRAPPC13A5PLN9 417 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 F2RL2O00254 374 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 RGS11O94810 467 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 HOXD4P09016 255 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NELFEP18615 380 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PIGAP37287 484 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ARF1P84077 181 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NAAAQ02083 359 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 KLF10Q13118 480 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PGAP1Q75T13 922 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PTOV1Q86YD1 416 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ELMOD2Q8IZ81 293 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 OR8B3Q8NGG8 313 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 WDR20Q8TBZ3 569 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 OR8B2Q96RD0 313 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 RTL8AQ9BWD3 113 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 AKTIPQ9H8T0 292 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 SLCO1C1Q9NYB5 712 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 MYH1P12882 1939 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NAV1Q8NEY1 1877 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 WASH4PA8MWX3 477 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 RPS2P15880 293 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ADRA1AP35348 466 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 DCDC1P59894 354 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PPA1Q15181 289 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF658BQ4V348 819 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 RAB41Q5JT25 222 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 DCAF10Q5QP82 559 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 AFMIDQ63HM1 303 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 BHLHA15Q7RTS1 189 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NET1Q7Z628 596 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 OR4D6Q8NGJ1 314 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 BAHD1Q8TBE0 780 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 NMD3Q96D46 503 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 MSI2Q96DH6 328 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TMA7Q9Y2S6 64 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 PHIPQ8WWQ0 1821 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ACOX3O15254 700 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 KRT36O76013 467 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC35E2P0CK97 266 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 CNR1P21554 472 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SOX3P41225 446 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PWWP2BQ6NUJ5 590 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SPACA3Q8IXA5 215 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC38A5Q8WUX1 472 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ITFG2Q969R8 447 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 CLK4Q9HAZ1 481 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 TRIM36Q9NQ86 728 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 TRPV5Q9NQA5 729 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 CCDC88AQ3V6T2 1871 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ANHXE9PGG2 379 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PPM1DO15297 605 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ELK4P28324 431 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PTGER1P34995 402 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 MAGEA2P43356 314 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 TRA2BP62995 288 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PPP1R3AQ16821 1122 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 CDONQ4KMG0 1287 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 DYNLRB2Q8TF09 96 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms