RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 A6NIZ1 184 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 CSF1P09603 554 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 HOXA1P49639 335 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 RAP1BP61224 184 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 RAP1AP62834 184 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 RPP30P78346 268 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 LYSMD4Q5XG99 296 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 B3GNT8Q7Z7M8 397 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SIMC1Q8NDZ2 872 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 TCTEX1D2Q8WW35 142 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF300Q96RE9 604 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 HRASLSQ9HDD0 168 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 MYH11P35749 1972 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 FUOMA2VDF0 154 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 FCGR2AP12318 317 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 HTR5AP47898 357 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 MRPS34P82930 218 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 LTBQ06643 244 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SERTAD2Q14140 314 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 CNN3Q15417 329 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 ARRDC3Q96B67 414 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF419Q96HQ0 510 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 UBXN10Q96LJ8 280 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 NICN1Q9BSH3 213 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SLC2A11Q9BYW1 496 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 ATG4BQ9Y4P1 393 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 V9GY05 133 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 UBR1Q8IWV7 1749 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 A0A0B4J2A0 478 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 OR6C65A6NJZ3 312 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 IL2RGP31785 369 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SELPLGQ14242 412 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 EIF4HQ15056 248 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 GDPD1Q8N9F7 314 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 CTRCQ99895 268 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SHPKQ9UHJ6 478 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 A0A1B0GVG6 124 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 CLDN17P56750 224 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 MRPL41Q8IXM3 137 aaKnown RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 CALHM2Q9HA72 323 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SIDT1Q9NXL6 827 aaKnown RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SLAMF8Q9P0V8 285 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 RNASET2O00584 256 aaKnown RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 RFPL3O75679 317 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 CCR7P32248 378 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 GPR18Q14330 331 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 ESPNLQ6ZVH7 1005 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 FCRLAQ7L513 359 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF417Q8TAU3 575 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 MIB2Q96AX9 1013 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 VN1R3Q9BXE9 311 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 UNKLQ9H9P5 680 aaKnown RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 HSFX1Q9UBD0 423 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 LOC285095A0A1B0GVY8 99 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 PRAMEF26H0Y7S4 382 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SRPX2O60687 465 aaPredicted RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 PRKACAP17612 351 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 HIST2H3PS2Q5TEC6 136 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 AADACL3Q5VUY0 350 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 NRG4Q8WWG1 115 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 HIDE1A8MVS5 230 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 CTSAP10619 480 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SLC6A8P48029 635 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SIX1Q15475 284 aaPredicted RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 PROX2Q3B8N5 592 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 NOXA1Q86UR1 476 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 H1FXQ92522 213 aaKnown RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 PSMF1Q92530 271 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SEC22AQ96IW7 307 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 MYADMQ96S97 322 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 BCL7BQ9BQE9 202 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 BTBD2Q9BX70 525 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 NMNAT2Q9BZQ4 307 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 TAS2R16Q9NYV7 291 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 ACOD1A6NK06 481 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 TIMM8AO60220 97 aaPredicted RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 SCGB1D1O95968 90 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 LPLP06858 475 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 PROZP22891 400 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 NPBWR1P48145 328 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 ZFP82Q8N141 532 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 GIMAP1Q8WWP7 306 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 CHFRQ96EP1 664 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 ULBP2Q9BZM5 246 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 TCEAL2Q9H3H9 227 aaPredicted RBP12.82□□□□□ -0.36
COL4A1-201ENST00000375820 CPNE7Q9UBL6 633 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 TRAPPC2LQ9UL33 140 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 HSPE1-MOB4S4R3N1 261 aa12.82□□□□□ -0.36
COL4A1-201ENST00000375820 NSG1A0A0A6YYJ2 146 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 NUDT7P0C024 238 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 IKZF1Q13422 519 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 LSAMPQ13449 338 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SLC10A1Q14973 349 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 NIPAL3Q6P499 406 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 LINC00696Q6ZRV3 163 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 MSI2Q96DH6 328 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 PDCD1LG2Q9BQ51 273 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 RCE1Q9Y256 329 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 TMEM176BQ3YBM2 270 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 STEAP3Q658P3 488 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms