RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 AGAP5A6NIR3 686 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 CLDN24A6NM45 220 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 RFXANKO14593 260 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 SMAD9O15198 467 aaKnown RBP19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 CYTIPO60759 359 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 KRT75O95678 551 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 FPR1P21462 350 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 HOXC12P31275 282 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 RYKP34925 604 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 SYT14P1Q58G82 188 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 COX20Q5RI15 118 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 AGBL2Q5U5Z8 902 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 GRINAQ7Z429 371 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 CMIPQ8IY22 773 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 ARFGAP2Q8N6H7 521 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 WFDC11Q8NEX6 87 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 STEAP2Q8NFT2 490 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 ZNF75CPQ92670 426 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 PIGTQ969N2 578 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 OR52B2Q96RD2 323 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 HDHD5Q9BXW7 423 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 MTHFD2LQ9H903 347 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 UBTD1Q9HAC8 227 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 DLL4Q9NR61 685 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 CTPS2Q9NRF8 586 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 SDR39U1Q9NRG7 319 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 SPIN1Q9Y657 262 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 MTORP42345 2549 aa19.29■□□□□ 0.68
CCDC28B-201ENST00000373602 ADAM11O75078 769 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 RPS4Y1P22090 263 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 MAGEA8P43361 318 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 DIO1P49895 249 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 CSNK2A1P68400 391 aaPredicted RBP19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 RASGEF1BQ0VAM2 473 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 KRTAP1-3Q8IUG1 177 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 PNPT1Q8TCS8 783 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 CNOT9Q92600 299 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 PMM1Q92871 262 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 SLC6A13Q9NSD5 602 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 CHRNA9Q9UGM1 479 aa19.28■□□□□ 0.68
CCDC28B-201ENST00000373602 ZNF724A8MTY0 619 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 ZNF814B7Z6K7 855 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 SULT2B1O00204 365 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 UBDO15205 165 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 ZCCHC18P0CG32 403 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 NR2F1P10589 423 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 OR3A2P47893 321 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 MVDP53602 400 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 NKX6-1P78426 367 aaPredicted RBP19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 SFRP5Q5T4F7 317 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 C20orf204Q6ZNR8 217 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 MSANTD1Q6ZTZ1 278 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 ADGRG3Q86Y34 549 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 WFDC8Q8IUA0 241 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 S100PBPQ96BU1 408 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 FREM1Q5H8C1 2179 aa19.27■□□□□ 0.68
CCDC28B-201ENST00000373602 RAI1Q7Z5J4 1906 aaPredicted RBP19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 ADAP00813 363 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 FESP07332 822 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 TFPIP10646 304 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 FOSL1P15407 271 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 FKBP2P26885 142 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 IDH2P48735 452 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 NR1H2P55055 460 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 P2RY6Q15077 328 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 MAPK11Q15759 364 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 SHEQ5VZ18 495 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 DNAJC14Q6Y2X3 702 aaPredicted RBP19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 MTDHQ86UE4 582 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 LRRC75A-AS1Q8N1F1 130 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 WDR60Q8WVS4 1066 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF300Q96RE9 604 aaPredicted RBP19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 RMND5AQ9H871 391 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 USH1CQ9Y6N9 552 aa19.26■□□□□ 0.67
CCDC28B-201ENST00000373602 AP3D1O14617 1153 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 DIAPH2O60879 1101 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 SMPD2O60906 423 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 PMS2P2O95744 297 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 DBIP07108 87 aaKnown RBP19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 HTR3AP46098 478 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 CLK1P49759 484 aaKnown RBP19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 POLR2JP52435 117 aaKnown RBP19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 GNA13Q14344 377 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 PDK3Q15120 406 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 TSC22D1Q15714 1073 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 ABLIM2Q6H8Q1 611 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 EPGNQ6UW88 154 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 OR9I1Q8NGQ6 314 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 PLPPR2Q96GM1 343 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 ITCHQ96J02 903 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 ARL5BQ96KC2 179 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 C7orf26Q96N11 449 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 CCL19Q99731 98 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 TMEM204Q9BSN7 226 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 TPT1P8Q9HAU6 139 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 HDGFL3Q9Y3E1 203 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 ACANP16112 2415 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF469Q96JG9 3925 aaPredicted RBP19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 PRR14LQ5THK1 2151 aa19.25■□□□□ 0.67
CCDC28B-201ENST00000373602 FAAHO00519 579 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms