RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 LYPD8Q6UX82 237 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 ELP5Q8TE02 316 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 HGDQ93099 445 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 LIN37Q96GY3 246 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-202ENST00000372405 Q96MT0 163 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 TBL1XR1Q9BZK7 514 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 SPRY4Q9C004 299 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 FREM2Q5SZK8 3169 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 KNTC1P50748 2209 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 C9orf172C9J069 976 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 DLGAP3O95886 979 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 DBTP11182 482 aaKnown RBP12.58□□□□□ -0.4
PTPRF-202ENST00000372405 PAX7P23759 505 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 PSPHP78330 225 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 DOC2BQ14184 412 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 TBCEQ15813 527 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-202ENST00000372405 DHRS13Q6UX07 377 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 CDK20Q8IZL9 346 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 STX19Q8N4C7 294 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 SVOPQ8N4V2 548 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 LRRC17Q8N6Y2 441 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 OR2T33Q8NG76 320 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 OR51A7Q8NH64 312 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 RORBQ92753 470 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 C12orf43Q96C57 262 aaKnown RBP12.58□□□□□ -0.4
PTPRF-202ENST00000372405 IMMP1LQ96LU5 166 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 CDC6Q99741 560 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 MCCC2Q9HCC0 563 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 MYOTQ9UBF9 498 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 PCSK5Q92824 1860 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 EFCAB10A6NFE3 127 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 H3BMQ9 156 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 TMX2-CTNND1H3BSU7 103 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF701M0R085 212 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-202ENST00000372405 ZFAND5O76080 213 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 PIPP12273 146 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-202ENST00000372405 GAS1P54826 345 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 CSRP2Q16527 193 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 UBE2UQ5VVX9 321 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 PLAG1Q6DJT9 500 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 SLC16A12Q6ZSM3 486 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 SLC46A3Q7Z3Q1 461 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF420Q8TAQ5 688 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-202ENST00000372405 RNF138Q8WVD3 245 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 COG8Q96MW5 612 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 DEPDC7Q96QD5 511 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 SLC38A2Q96QD8 506 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 TAAR9Q96RI9 348 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 TNFRSF13CQ96RJ3 184 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 FUNDC2Q9BWH2 189 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 ADAM19Q9H013 955 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF700Q9H0M5 742 aa12.58□□□□□ -0.4
PTPRF-202ENST00000372405 KDM4EB2RXH2 506 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-202ENST00000372405 EIF4E2O60573 245 aaKnown RBP12.57□□□□□ -0.4
PTPRF-202ENST00000372405 OR2J2O76002 312 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 DKK1O94907 266 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 ATE1O95260 518 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 MT-CO3P00414 261 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 PTHP01270 115 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 SLC1A3P43003 542 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 RPS18P62269 152 aaKnown RBP12.57□□□□□ -0.4
PTPRF-202ENST00000372405 EGR4Q05215 589 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 BTBD16Q32M84 506 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 AADACL4Q5VUY2 407 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 MEDAGQ5VYS4 303 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 SMARCD3Q6STE5 483 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 B3GNT6Q6ZMB0 384 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 OAFQ86UD1 273 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 LNX2Q8N448 690 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 PRSS33Q8NF86 280 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 ANKK1Q8NFD2 765 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 OR11G2Q8NGC1 345 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 OR5L2Q8NGL0 311 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 TSC22D3Q99576 134 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 DDA1Q9BW61 102 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 CDCA4Q9BXL8 241 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 PTTG2Q9NZH5 202 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 FOXJ2Q9P0K8 574 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 RPL36Q9Y3U8 105 aaKnown RBP12.57□□□□□ -0.4
PTPRF-202ENST00000372405 HRH3Q9Y5N1 445 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 COMMD3-BMI1R4GMX3 469 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 EML6Q6ZMW3 1958 aa12.57□□□□□ -0.4
PTPRF-202ENST00000372405 TRIM64BA6NI03 449 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ELOA3DA6NLF2 546 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 MASP2O00187 686 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 SOCS6O14544 535 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 RCBTB2O95199 551 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 JMJD7P0C870 316 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ADORA3P0DMS8 318 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 TACR3P29371 465 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 SLC6A8P48029 635 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 DBPQ10586 325 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 EFR3AQ14156 821 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ELOA3BQ3SY89 546 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 BICRALQ6AI39 1079 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PIP4P1Q86T03 277 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 BBS1Q8NFJ9 593 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ELOA3Q8NG57 546 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 OR5W2Q8NH69 310 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 DUSP19Q8WTR2 217 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms