RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MTERF3Q96E29 417 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 ACTRT3Q9BYD9 372 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 PLA2G12AQ9BZM1 189 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 C12orf65Q9H3J6 166 aaKnown RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 FAF1Q9UNN5 650 aaPredicted RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 AMDHD2Q9Y303 409 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 TRAF6Q9Y4K3 522 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 CCL27Q9Y4X3 112 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 SPIN1Q9Y657 262 aaPredicted RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS29-201ENST00000360579 IGHV4-61A0A0C4DH41 118 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 EXOC1LA0A1B0GW35 172 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 DNPH1O43598 174 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 MRPL33O75394 65 aaKnown RBP12.13□□□□□ -0.47
VPS29-201ENST00000360579 ASMTP46597 345 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 RNF144AP50876 292 aaPredicted RBP12.13□□□□□ -0.47
VPS29-201ENST00000360579 TGFBR3Q03167 851 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 CARTPTQ16568 116 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 SWI5Q1ZZU3 235 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 SYT14P1Q58G82 188 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 CFAP157Q5JU67 520 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 OR56A1Q8NGH5 318 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 PIGXQ8TBF5 258 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 ACMSDQ8TDX5 336 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 FBXO17Q96EF6 278 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 TSSK3Q96PN8 268 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 FMO2Q99518 471 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 C1QTNF6Q9BXI9 259 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 ANKZF1Q9H8Y5 726 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 DCTN4Q9UJW0 460 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 TMED5Q9Y3A6 229 aa12.13□□□□□ -0.47
VPS29-201ENST00000360579 NPIPA5A0A0B4J1W7 369 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 ZNF716A6NP11 495 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 NPIPA7E9PJI5 369 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 NPIPB9F8W1W9 429 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 ITGA5P08648 1049 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 NPIPA8P0DM63 369 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 MYL2P10916 166 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 NEFHP12036 1026 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 SDC1P18827 310 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 FKBP2P26885 142 aaKnown RBP12.12□□□□□ -0.47
VPS29-201ENST00000360579 CFPP27918 469 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 CASQ1P31415 396 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 SRP14P37108 136 aaKnown RBP12.12□□□□□ -0.47
VPS29-201ENST00000360579 RPL3P39023 403 aaKnown RBP12.12□□□□□ -0.47
VPS29-201ENST00000360579 SLC16A1P53985 500 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 MERTKQ12866 999 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 NDUFAF6Q330K2 333 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 FRMD7Q6ZUT3 714 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 HOMEZQ8IX15 550 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 ZMYND19Q96E35 227 aaPredicted RBP12.12□□□□□ -0.47
VPS29-201ENST00000360579 FCRL1Q96LA6 429 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 FOXN4Q96NZ1 517 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 SORCS2Q96PQ0 1159 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 LAT2Q9GZY6 243 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 SIRT3Q9NTG7 399 aaPredicted RBP12.12□□□□□ -0.47
VPS29-201ENST00000360579 PARPBPQ9NWS1 579 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 FBXO9Q9UK97 447 aaPredicted RBP12.12□□□□□ -0.47
VPS29-201ENST00000360579 MEGF8Q7Z7M0 2845 aa12.12□□□□□ -0.47
VPS29-201ENST00000360579 SERINC4A6NH21 518 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ESPNB1AK53 854 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ATP6V1G2-DDX39BF2Z307 99 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ANKRD28O15084 1053 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 DNAJA2O60884 412 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 PMS2P2O95744 297 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 WNT11O96014 354 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 TFPIP10646 304 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ITGA2P17301 1181 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 PGCP20142 388 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 PCMT1P22061 227 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 HPCAL1P37235 193 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 APOBEC1P41238 236 aaKnown RBP12.11□□□□□ -0.47
VPS29-201ENST00000360579 MAGEA8P43361 318 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 CCT3P49368 545 aaKnown RBP12.11□□□□□ -0.47
VPS29-201ENST00000360579 SESN3P58005 492 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 PRPS1P60891 318 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 CKAP4Q07065 602 aaKnown RBP12.11□□□□□ -0.47
VPS29-201ENST00000360579 MST1LQ2TV78 715 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 KLHL24Q6TFL4 600 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 UGT2A3Q6UWM9 527 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 SLC46A3Q7Z3Q1 461 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 WDR31Q8NA23 367 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 CLHC1Q8NHS4 586 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ZFAND2BQ8WV99 257 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 HPS1Q92902 700 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 MOAP1Q96BY2 351 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ZNF524Q96C55 264 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 THUMPD3Q9BV44 507 aaKnown RBP12.11□□□□□ -0.47
VPS29-201ENST00000360579 BPESC1Q9GZL8 116 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 NMUR2Q9GZQ4 415 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 ADAM19Q9H013 955 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 QRSL1Q9H0R6 528 aaKnown RBP12.11□□□□□ -0.47
VPS29-201ENST00000360579 SLC17A5Q9NRA2 495 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 UPB1Q9UBR1 384 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 DCDC2Q9UHG0 476 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 TMEFF2Q9UIK5 374 aaPredicted RBP12.11□□□□□ -0.47
VPS29-201ENST00000360579 HDGFL3Q9Y3E1 203 aa12.11□□□□□ -0.47
VPS29-201ENST00000360579 TENM1Q9UKZ4 2725 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 A0A0A6YYJ9 748 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 B9A039 149 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms