RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNF843Q8N446 348 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 DNAJA4Q8WW22 397 aaPredicted RBP20.03■□□□□ 0.8
SDC3-202ENST00000339394 MAGIXQ9H6Y5 334 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 SPRR3Q9UBC9 169 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 A4GNTQ9UNA3 340 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 ENPP4Q9Y6X5 453 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 HEATR5AQ86XA9 2040 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 PCNX3Q9H6A9 2034 aa20.03■□□□□ 0.8
SDC3-202ENST00000339394 NCKAP5O14513 1909 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 B8ZZF3 427 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 LINC01387J3KSC0 135 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 ZNHIT1O43257 154 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 C1QL1O75973 258 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 THY1P04216 161 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 GPIP06744 558 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 BMP7P18075 431 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 GCKP35557 465 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 CDH12P55289 794 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 TAS2R41P59536 307 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 ACTR3P61158 418 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 CHRNB3Q05901 458 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 KPNB1Q14974 876 aaKnown RBP20.02■□□□□ 0.8
SDC3-202ENST00000339394 ALG10BQ5I7T1 473 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 ABTB1Q969K4 478 aaPredicted RBP20.02■□□□□ 0.8
SDC3-202ENST00000339394 ZNF300Q96RE9 604 aaPredicted RBP20.02■□□□□ 0.8
SDC3-202ENST00000339394 AURKCQ9UQB9 309 aa20.02■□□□□ 0.8
SDC3-202ENST00000339394 TRAPPC13A5PLN9 417 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 H3BML4 177 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 AQP7O14520 342 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 FFAR1O14842 300 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 FABP3P05413 133 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 ELK4P28324 431 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 STARP49675 285 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 VASNQ6EMK4 673 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 ATG4DQ86TL0 474 aaPredicted RBP20.01■□□□□ 0.79
SDC3-202ENST00000339394 CHERPQ8IWX8 916 aaKnown RBP20.01■□□□□ 0.79
SDC3-202ENST00000339394 PRRC1Q96M27 445 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 TIMP4Q99727 224 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 POLR2J2Q9GZM3 115 aaKnown RBP20.01■□□□□ 0.79
SDC3-202ENST00000339394 POLR2J3Q9H1A7 115 aaKnown RBP20.01■□□□□ 0.79
SDC3-202ENST00000339394 DENND2DQ9H6A0 471 aaPredicted RBP20.01■□□□□ 0.79
SDC3-202ENST00000339394 TMEM185BQ9H7F4 350 aa20.01■□□□□ 0.79
SDC3-202ENST00000339394 TMED7-TICAM2A0A0A6YYA0 188 aa20■□□□□ 0.79
SDC3-202ENST00000339394 DIRAS1O95057 198 aa20■□□□□ 0.79
SDC3-202ENST00000339394 ACTL6AO96019 429 aa20■□□□□ 0.79
SDC3-202ENST00000339394 MT-ND1P03886 318 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RAP2AP10114 183 aa20■□□□□ 0.79
SDC3-202ENST00000339394 PEPDP12955 493 aa20■□□□□ 0.79
SDC3-202ENST00000339394 EDN3P14138 238 aa20■□□□□ 0.79
SDC3-202ENST00000339394 ITGA2P17301 1181 aa20■□□□□ 0.79
SDC3-202ENST00000339394 CCNA2P20248 432 aa20■□□□□ 0.79
SDC3-202ENST00000339394 MAGEA2P43356 314 aa20■□□□□ 0.79
SDC3-202ENST00000339394 LHX2P50458 406 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RAC1P63000 192 aa20■□□□□ 0.79
SDC3-202ENST00000339394 DCST1Q5T197 706 aa20■□□□□ 0.79
SDC3-202ENST00000339394 FGD2Q7Z6J4 655 aa20■□□□□ 0.79
SDC3-202ENST00000339394 ZDHHC21Q8IVQ6 265 aa20■□□□□ 0.79
SDC3-202ENST00000339394 LILRA2Q8N149 483 aa20■□□□□ 0.79
SDC3-202ENST00000339394 SLC38A4Q969I6 547 aa20■□□□□ 0.79
SDC3-202ENST00000339394 SLC41A3Q96GZ6 507 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RSRC1Q96IZ7 334 aaKnown RBP20■□□□□ 0.79
SDC3-202ENST00000339394 CHID1Q9BWS9 393 aa20■□□□□ 0.79
SDC3-202ENST00000339394 SERINC1Q9NRX5 453 aa20■□□□□ 0.79
SDC3-202ENST00000339394 SELENONQ9NZV5 590 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RHCGQ9UBD6 479 aa20■□□□□ 0.79
SDC3-202ENST00000339394 CHRNA9Q9UGM1 479 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RIMS3Q9UJD0 308 aa20■□□□□ 0.79
SDC3-202ENST00000339394 SLC7A7Q9UM01 511 aa20■□□□□ 0.79
SDC3-202ENST00000339394 TMED7Q9Y3B3 224 aa20■□□□□ 0.79
SDC3-202ENST00000339394 FAM32AQ9Y421 112 aaKnown RBP20■□□□□ 0.79
SDC3-202ENST00000339394 PRSS23O95084 383 aa20■□□□□ 0.79
SDC3-202ENST00000339394 OR5F1O95221 314 aa20■□□□□ 0.79
SDC3-202ENST00000339394 OPN1LWP04000 364 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RHCEP18577 417 aa20■□□□□ 0.79
SDC3-202ENST00000339394 FUT4P22083 530 aa20■□□□□ 0.79
SDC3-202ENST00000339394 CXCR1P25024 350 aa20■□□□□ 0.79
SDC3-202ENST00000339394 CRYZQ08257 329 aaKnown RBP20■□□□□ 0.79
SDC3-202ENST00000339394 SELENBP1Q13228 472 aa20■□□□□ 0.79
SDC3-202ENST00000339394 SWT1Q5T5J6 900 aaKnown RBP20■□□□□ 0.79
SDC3-202ENST00000339394 C3orf33Q6P1S2 294 aa20■□□□□ 0.79
SDC3-202ENST00000339394 PIWIL3Q7Z3Z3 882 aaKnown RBP20■□□□□ 0.79
SDC3-202ENST00000339394 GDF7Q7Z4P5 450 aa20■□□□□ 0.79
SDC3-202ENST00000339394 ATP6V1C2Q8NEY4 427 aa20■□□□□ 0.79
SDC3-202ENST00000339394 RNF217Q8TC41 542 aa20■□□□□ 0.79
SDC3-202ENST00000339394 C12orf10Q9HB07 376 aa20■□□□□ 0.79
SDC3-202ENST00000339394 CCM2LQ9NUG4 571 aaPredicted RBP20■□□□□ 0.79
SDC3-202ENST00000339394 ACAD8Q9UKU7 415 aa20■□□□□ 0.79
SDC3-202ENST00000339394 AP4B1Q9Y6B7 739 aa20■□□□□ 0.79
SDC3-202ENST00000339394 OR14I1A6ND48 311 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 EIF4E1BA6NMX2 242 aaKnown RBP19.99■□□□□ 0.79
SDC3-202ENST00000339394 NPIPA2E9PIF3 369 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 NPIPA3F8WFD2 350 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 CHP2O43745 196 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 LYPD3O95274 346 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 PNMTP11086 282 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 POU3F2P20265 443 aaPredicted RBP19.99■□□□□ 0.79
SDC3-202ENST00000339394 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.99■□□□□ 0.79
SDC3-202ENST00000339394 GFRALQ6UXV0 394 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 ZNF771Q7L3S4 317 aaPredicted RBP19.99■□□□□ 0.79
SDC3-202ENST00000339394 CYP4Z1Q86W10 505 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms