RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 VEGFBP49765 207 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 P2RY14Q15391 338 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 C5orf46Q6UWT4 87 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 SULF2Q8IWU5 870 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 FAM160A2Q8N612 972 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 OR6F1Q8NGZ6 308 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 HHIPQ96QV1 700 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 UHRF1Q96T88 793 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 HCFC2Q9Y5Z7 792 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 MYH6P13533 1939 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 MEIOCA2RUB1 952 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 H3BQ06 376 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 PSMB5P28074 263 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 CD6P30203 668 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 SSTR4P31391 388 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 ATP1B3P54709 279 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 EPHA4P54764 986 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 TECPR1Q7Z6L1 1165 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 C12orf45Q8N5I9 185 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 TCTN2Q96GX1 697 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 EGLN3Q9H6Z9 239 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 LRIT1Q9P2V4 623 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 NUP188Q5SRE5 1749 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ARFGEF2Q9Y6D5 1785 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 B4DXG7 233 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 AIFM1O95831 613 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 LPLP06858 475 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 TNFSF8P32971 234 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 EFNA3P52797 238 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 SLC22A6Q4U2R8 563 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 CLVS2Q5SYC1 327 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 AGAP7PQ5VUJ5 663 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 AGAP6Q5VW22 663 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 MEX3DQ86XN8 651 aaKnown RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 MMP21Q8N119 569 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 OR2A12Q8NGT7 310 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 OR4K15Q8NH41 348 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 UBTD2Q8WUN7 234 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ZBTB8AQ96BR9 441 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 AGAP4Q96P64 663 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 INSM2Q96T92 566 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 NXF5Q9H1B4 397 aaKnown RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 KCNJ16Q9NPI9 418 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 FBXO7Q9Y3I1 522 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 MAP1BP46821 2468 aaKnown RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 A0A1W2PQ09 198 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 H0YGG7 62 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF264O43296 627 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 LILRB5O75023 590 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ALDOBP05062 364 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 TNFSF4P23510 183 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ALDH3B1P43353 468 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ARG2P78540 354 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ALKAL1Q6UXT8 129 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 L3MBTL4Q8NA19 623 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 OR51Q1Q8NH59 317 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 RHOXF1Q8NHV9 184 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 CXXC1Q9P0U4 656 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 TAAR2Q9P1P5 351 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 EDARQ9UNE0 448 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 NUMA1Q14980 2115 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 HPGDSO60760 199 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 GJA4P35212 333 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 OPRD1P41143 372 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 VASPP50552 380 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 IDH3GP51553 393 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 HSD17B7P56937 341 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 POU3F1Q03052 451 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 MPEG1Q2M385 716 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 MRPL2Q5T653 305 aaKnown RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 BEST4Q8NFU0 473 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ZFAND1Q8TCF1 268 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 SMIM14Q96QK8 99 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 SSX3Q99909 188 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ULBP2Q9BZM5 246 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 NOX3Q9HBY0 568 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 GLTPQ9NZD2 209 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 KIF25Q9UIL4 384 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF281Q9Y2X9 895 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 METTL15A6NJ78 407 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 D6RAR5 112 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 CHRM4P08173 479 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 MAOBP27338 520 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 HOXA9P31269 272 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 RAB38P57729 211 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 RAB4BP61018 213 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 RPL23AP62750 156 aaKnown RBP12.67□□□□□ -0.38
SF3A1-201ENST00000215793 CHRNEQ04844 493 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 TRNP1Q6NT89 227 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 SHISA6Q6ZSJ9 500 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 LANCL3Q6ZV70 420 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 OR14A16Q8NHC5 309 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 RLIMQ9NVW2 624 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 IL37Q9NZH6 218 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 SLAMF8Q9P0V8 285 aa12.67□□□□□ -0.38
SF3A1-201ENST00000215793 NSG1A0A0A6YYJ2 146 aa12.66□□□□□ -0.38
SF3A1-201ENST00000215793 SULT1C2O00338 296 aa12.66□□□□□ -0.38
SF3A1-201ENST00000215793 GPR137BO60478 399 aa12.66□□□□□ -0.38
SF3A1-201ENST00000215793 EPHA1P21709 976 aa12.66□□□□□ -0.38
SF3A1-201ENST00000215793 GDF1P27539 372 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms